Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   JMB28_RS00185 Genome accession   NZ_CP068712
Coordinates   44065..45414 (-) Length   449 a.a.
NCBI ID   WP_202847885.1    Uniprot ID   -
Organism   Staphylococcus shinii strain 14AME19     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39065..50414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS00160 (JMB28_00160) - 39479..40576 (-) 1098 WP_202847882.1 DNA adenine methylase -
  JMB28_RS00165 (JMB28_00165) - 40682..41185 (-) 504 WP_115336942.1 DUF1643 domain-containing protein -
  JMB28_RS00170 (JMB28_00170) - 41199..41510 (-) 312 WP_202847883.1 DUF960 family protein -
  JMB28_RS00175 (JMB28_00175) - 41606..41944 (-) 339 WP_040030080.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JMB28_RS00180 (JMB28_00180) ccrB 42418..44043 (-) 1626 WP_202847884.1 recombinase family protein Machinery gene
  JMB28_RS00185 (JMB28_00185) ccrA 44065..45414 (-) 1350 WP_202847885.1 recombinase family protein Machinery gene
  JMB28_RS00190 (JMB28_00190) - 45606..45884 (-) 279 WP_031903869.1 hypothetical protein -
  JMB28_RS00195 (JMB28_00195) - 45955..47745 (-) 1791 WP_202847886.1 DUF927 domain-containing protein -
  JMB28_RS00200 (JMB28_00200) - 47745..47990 (-) 246 WP_071331185.1 hypothetical protein -
  JMB28_RS00205 (JMB28_00205) - 48128..49171 (+) 1044 WP_202847887.1 ACP synthase -
  JMB28_RS14520 (JMB28_00215) - 49245..49934 (+) 690 Protein_39 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52303.89 Da        Isoelectric Point: 9.9395

>NTDB_id=530592 JMB28_RS00185 WP_202847885.1 44065..45414(-) (ccrA) [Staphylococcus shinii strain 14AME19]
MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKLITTHAPFGYHYH
NGTFTIDTVKSPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKTDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAI
CQDFFQNQQLYSKINHTIQQRLKRQRDVETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSIHTHQIQKALQ
NVMQQRFTLNMLNPYIDVISINKNKTLAGIYFKNEPLNIVNQTTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=530592 JMB28_RS00185 WP_202847885.1 44065..45414(-) (ccrA) [Staphylococcus shinii strain 14AME19]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCGAGGC
ATTAGCCAAAAAACATAATATTCAATACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
TTGAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAACTGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAATCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAACCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAAACAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGATT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TGTAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCCATACGCATCAAATTCAAAAGGCTTTACAA
AATGTCATGCAACAACGTTTCACATTAAACATGCTGAATCCCTATATTGATGTAATTAGTATTAATAAAAACAAAACTCT
TGCGGGGATCTATTTCAAAAATGAACCTCTAAACATTGTCAATCAAACGACGCAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

93.318

100

0.933
  ccrA Staphylococcus aureus N315

75.056

100

0.751