Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   K8P00_RS08085 Genome accession   NZ_CP082861
Coordinates   1598776..1599444 (+) Length   222 a.a.
NCBI ID   WP_003822131.1    Uniprot ID   -
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593776..1604444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS08065 (K8P00_08020) - 1594337..1596256 (-) 1920 WP_003822127.1 Mu transposase C-terminal domain-containing protein -
  K8P00_RS08070 (K8P00_08025) - 1596249..1596911 (-) 663 WP_003822128.1 heteromeric transposase endonuclease subunit TnsA -
  K8P00_RS08075 (K8P00_08030) - 1597074..1597724 (+) 651 Protein_1566 ATP-binding protein -
  K8P00_RS08080 (K8P00_08035) - 1597946..1598737 (+) 792 WP_003822130.1 SPOR domain-containing protein -
  K8P00_RS08085 (K8P00_08040) dsbA1 1598776..1599444 (+) 669 WP_003822131.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  K8P00_RS08090 (K8P00_08045) - 1599529..1600350 (+) 822 WP_003822132.1 undecaprenyl-diphosphate phosphatase -
  K8P00_RS08095 (K8P00_08050) - 1600525..1601355 (+) 831 WP_003822133.1 alpha/beta hydrolase -
  K8P00_RS08100 (K8P00_08055) - 1601530..1602723 (+) 1194 WP_003822134.1 amino acid aminotransferase -
  K8P00_RS08105 (K8P00_08060) - 1602951..1603277 (+) 327 WP_003822136.1 hypothetical protein -
  K8P00_RS08110 (K8P00_08065) - 1603466..1603924 (-) 459 WP_003822138.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24186.84 Da        Isoelectric Point: 10.2281

>NTDB_id=530569 K8P00_RS08085 WP_003822131.1 1598776..1599444(+) (dsbA1) [Eikenella corrodens strain FDAARGOS_1474]
MKLKALLLSALTVFAVTAAQAKAVEGTDYIVRSNVIKPVQPNKIEVTEFFGYFCIHCQHLEPTIEQQSKRFASDTVLRQE
HVVWQPAHQTLARLAAAVKSTGLSRQANQAIFKALADGVVTDEAGLKAWIQQQPYGSRLLAAYNSPQAAAAAQTMQQNTV
TYNITKTPVIVVGGKYELTNSQNMAVMQELIEKVRAERGMPAPAPRTVVRSRGAAIAGQANR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=530569 K8P00_RS08085 WP_003822131.1 1598776..1599444(+) (dsbA1) [Eikenella corrodens strain FDAARGOS_1474]
ATGAAACTGAAAGCCCTACTTCTCTCCGCCCTCACCGTCTTCGCCGTTACCGCCGCCCAAGCCAAAGCTGTGGAAGGCAC
CGACTACATTGTACGCAGCAATGTGATCAAACCCGTACAACCCAACAAAATCGAAGTAACCGAATTCTTCGGCTATTTCT
GCATCCACTGCCAACACCTGGAGCCGACTATCGAACAGCAAAGCAAACGCTTCGCCTCCGACACCGTATTGCGCCAAGAG
CACGTGGTGTGGCAGCCTGCCCACCAAACCCTCGCCCGCCTGGCCGCCGCCGTGAAATCCACCGGCCTCTCCCGCCAGGC
CAACCAGGCCATCTTCAAAGCCCTGGCGGACGGCGTCGTAACCGACGAAGCCGGCCTGAAAGCCTGGATTCAGCAGCAGC
CCTACGGCAGCCGCCTGCTTGCCGCCTATAATAGTCCGCAAGCCGCCGCCGCTGCCCAAACCATGCAGCAAAACACCGTT
ACCTACAACATCACCAAAACCCCGGTTATCGTAGTGGGCGGCAAATACGAGCTCACTAACTCCCAAAACATGGCCGTGAT
GCAAGAGCTGATTGAAAAAGTACGCGCCGAACGAGGTATGCCCGCCCCCGCCCCGCGCACCGTAGTGCGCAGCCGCGGTG
CAGCCATCGCCGGCCAAGCCAACCGCTAA

Domains

Predicted by InterProScan.

Thioredoxin (Thioredoxin_4)

(43-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

38.596

100

0.396
  dsbA2 Neisseria meningitidis MC58

43.478

82.883

0.36