Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   JM964_RS07990 Genome accession   NZ_CP068708
Coordinates   1624353..1625042 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1619353..1630042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS07965 (JM964_07965) - 1619823..1620536 (-) 714 Protein_1534 NADPH-dependent oxidoreductase -
  JM964_RS07970 (JM964_07970) dnaI 1620533..1621432 (-) 900 WP_202847525.1 primosomal protein DnaI -
  JM964_RS07975 (JM964_07975) - 1621432..1622583 (-) 1152 WP_202847526.1 replication initiation/membrane attachment protein -
  JM964_RS07980 (JM964_07980) nrdR 1622570..1623061 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  JM964_RS07985 (JM964_07985) - 1623133..1624263 (-) 1131 WP_044679901.1 AI-2E family transporter -
  JM964_RS07990 (JM964_07990) covR 1624353..1625042 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  JM964_RS07995 (JM964_07995) gndA 1625124..1626551 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  JM964_RS08000 (JM964_08000) - 1626648..1627187 (-) 540 WP_014736258.1 YceD family protein -
  JM964_RS08005 (JM964_08005) trxB 1627197..1628114 (-) 918 WP_044675053.1 thioredoxin-disulfide reductase -
  JM964_RS08010 (JM964_08010) - 1628128..1628352 (-) 225 WP_014638521.1 DUF4059 family protein -
  JM964_RS08015 (JM964_08015) - 1628370..1629713 (-) 1344 WP_024386748.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=530564 JM964_RS07990 WP_012027645.1 1624353..1625042(-) (covR) [Streptococcus suis strain ID33329]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=530564 JM964_RS07990 WP_012027645.1 1624353..1625042(-) (covR) [Streptococcus suis strain ID33329]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTTTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCAATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTAGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432