Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JM964_RS00795 Genome accession   NZ_CP068708
Coordinates   128564..128959 (+) Length   131 a.a.
NCBI ID   WP_024409105.1    Uniprot ID   A0A0Z8WT08
Organism   Streptococcus suis strain ID33329     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 129640..130842 128564..128959 flank 681


Gene organization within MGE regions


Location: 128564..130842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS00795 (JM964_00795) ssbA 128564..128959 (+) 396 WP_024409105.1 single-stranded DNA-binding protein Machinery gene
  JM964_RS00800 (JM964_00800) - 129640..130842 (-) 1203 Protein_126 IS110 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14824.68 Da        Isoelectric Point: 5.0026

>NTDB_id=530539 JM964_RS00795 WP_024409105.1 128564..128959(+) (ssbA) [Streptococcus suis strain ID33329]
MYNKVIAIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=530539 JM964_RS00795 WP_024409105.1 128564..128959(+) (ssbA) [Streptococcus suis strain ID33329]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGTAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGTAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGTCGGGCTCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8WT08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374