Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   K8P00_RS02095 Genome accession   NZ_CP082861
Coordinates   416139..416663 (-) Length   174 a.a.
NCBI ID   WP_035581278.1    Uniprot ID   -
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411139..421663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS02070 (K8P00_02060) - 411504..411947 (+) 444 WP_035581275.1 DNA polymerase III subunit chi -
  K8P00_RS02075 (K8P00_02065) pheS 412099..413091 (+) 993 WP_003824824.1 phenylalanine--tRNA ligase subunit alpha -
  K8P00_RS02080 (K8P00_02070) pheT 413262..415622 (+) 2361 WP_003824825.1 phenylalanine--tRNA ligase subunit beta -
  K8P00_RS02085 (K8P00_02075) - 415689..416126 (-) 438 WP_049257746.1 type IV pilin protein -
  K8P00_RS02095 (K8P00_02080) pilK 416139..416663 (-) 525 WP_035581278.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  K8P00_RS02100 (K8P00_02085) - 416645..417736 (-) 1092 WP_003824829.1 PilW family protein -
  K8P00_RS02105 (K8P00_02090) pilV/pilI 417743..418306 (-) 564 WP_049257748.1 type IV pilus modification protein PilV Regulator
  K8P00_RS02110 (K8P00_02095) pilH 418326..418982 (-) 657 WP_141744157.1 GspH/FimT family pseudopilin Machinery gene
  K8P00_RS02115 (K8P00_02100) dnaB 419043..420431 (-) 1389 WP_023887936.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19260.74 Da        Isoelectric Point: 9.1337

>NTDB_id=530539 K8P00_RS02095 WP_035581278.1 416139..416663(-) (pilK) [Eikenella corrodens strain FDAARGOS_1474]
MRQSIVTQKQQGYTLFIVLIMMLVIALIVVASMQSTNTEMRISSNDADRKYAFSLAEQALRNGEQRIVTEQNKAFTAVAN
SNSCTDGICGGKASDSTPVWKRSDSVVNLNEANKGRHCLKSQSSNTNNACYMVERLGEIADQNYKNVFRVTARAWGANNN
TVVTLQSYVEYSGK

Nucleotide


Download         Length: 525 bp        

>NTDB_id=530539 K8P00_RS02095 WP_035581278.1 416139..416663(-) (pilK) [Eikenella corrodens strain FDAARGOS_1474]
ATGCGCCAATCAATCGTAACTCAAAAACAACAAGGCTATACTCTATTCATCGTACTAATTATGATGCTGGTTATTGCACT
AATTGTTGTTGCCAGCATGCAATCAACCAATACAGAAATGCGTATTAGCTCAAATGATGCAGATAGGAAATATGCCTTCT
CTCTCGCTGAACAAGCCCTACGGAATGGTGAACAACGTATTGTAACTGAGCAAAATAAAGCATTTACTGCTGTAGCCAAT
AGTAACTCTTGTACAGATGGCATTTGTGGCGGTAAAGCATCTGATTCTACGCCTGTTTGGAAAAGAAGTGATTCCGTTGT
CAATTTAAATGAAGCAAACAAAGGTAGGCACTGTTTAAAGAGTCAGTCGTCTAACACTAATAATGCTTGTTATATGGTGG
AACGGTTGGGTGAAATTGCCGACCAAAACTATAAAAATGTCTTCCGCGTAACGGCCCGCGCATGGGGAGCTAACAATAAT
ACTGTAGTCACATTACAGTCTTACGTTGAATATTCTGGCAAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(11-61)

Type IV pilus assembly protein PilX C-term (PilX)

(86-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

38.947

100

0.425