Detailed information    

insolico Bioinformatically predicted

Overview

Name   covS   Type   Regulator
Locus tag   LLUC073_RS08055 Genome accession   NZ_CP068698
Coordinates   1558265..1559737 (-) Length   490 a.a.
NCBI ID   WP_021037558.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC073     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553265..1564737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC073_RS08035 (LLUC073_07835) murG 1553581..1554654 (-) 1074 WP_011676626.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  LLUC073_RS08040 (LLUC073_07840) murD 1554897..1556246 (-) 1350 WP_282670751.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  LLUC073_RS08045 (LLUC073_07845) - 1556415..1556756 (-) 342 WP_282670752.1 P-II family nitrogen regulator -
  LLUC073_RS08050 (LLUC073_07850) - 1556838..1558079 (-) 1242 WP_282670753.1 ammonium transporter -
  LLUC073_RS08055 (LLUC073_07855) covS 1558265..1559737 (-) 1473 WP_021037558.1 HAMP domain-containing histidine kinase Regulator
  LLUC073_RS08060 (LLUC073_07860) covR 1559750..1560442 (-) 693 WP_282670754.1 response regulator transcription factor Regulator
  LLUC073_RS08065 (LLUC073_07865) - 1560599..1561129 (-) 531 WP_011834860.1 DUF177 domain-containing protein -
  LLUC073_RS08070 (LLUC073_07870) - 1561262..1561507 (-) 246 WP_011676633.1 type B 50S ribosomal protein L31 -
  LLUC073_RS08075 (LLUC073_07875) - 1561831..1562193 (-) 363 WP_282670755.1 TIGR02328 family protein -
  LLUC073_RS08080 (LLUC073_07880) - 1562430..1563341 (-) 912 WP_011676635.1 CHAP domain-containing protein -
  LLUC073_RS08085 (LLUC073_07885) - 1563398..1564287 (-) 890 Protein_1573 IS982 family transposase -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 55890.74 Da        Isoelectric Point: 4.7011

>NTDB_id=530467 LLUC073_RS08055 WP_021037558.1 1558265..1559737(-) (covS) [Lactococcus cremoris strain UC073]
MKKLFTFNKKKETVEESSAKRSIMLRWAFANTVFCFITFTLFATLTYQLTISSFIKEEQRLLTGSMDSVEEVLEQADAPL
NSTNLNTYIEATSKIQNGESEGMSLGSIIGTRKAFYIYDLNHKLLYSTNRHDFGFQKQGNNEMKEIQGENPGYLVQRKIV
SKGTGQVVGYLQAFYDTTTYHRISNLLLVVLLILEIVALIVAQMIGYFMANYFMKPLEKLYQGMQEMASDPTNDFKPIEI
ESGDEIEELAHVYNDMMLKMKAYLEQQNRFVSDVSHELRTPLAVLDGHINLLNRWGKNDPEVLDESLQASLDEVDRMKKM
LEEMLALARLENVDLSSEELDCDVGKVSNHALKNFQLLHEDFEIVLDNQLIYPVHARISENHFEQGLRILLDNAVKYSPD
DRKEIVITVSEDEQFVITSVSDKGIGIAEEDINHLFERFFRADKARNREIGGTGLGLPILARLAENYQGEIEVSSELGIG
STFTLKFPKM

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=530467 LLUC073_RS08055 WP_021037558.1 1558265..1559737(-) (covS) [Lactococcus cremoris strain UC073]
ATGAAAAAATTATTCACTTTCAACAAGAAAAAGGAAACGGTAGAAGAAAGTTCGGCTAAGCGGTCTATTATGCTTAGGTG
GGCTTTTGCTAACACCGTTTTTTGTTTTATTACTTTTACTCTTTTTGCAACATTAACTTATCAACTGACCATAAGTTCTT
TCATCAAGGAGGAACAAAGGTTATTGACAGGTTCAATGGACAGCGTTGAAGAGGTATTAGAACAAGCGGATGCTCCTTTA
AATTCAACTAATTTGAATACTTATATTGAAGCGACATCAAAGATTCAAAATGGGGAATCGGAAGGAATGAGTCTGGGAAG
TATCATCGGGACTCGGAAAGCATTTTATATTTATGATTTAAATCATAAATTACTATATTCAACTAATCGACATGATTTTG
GATTTCAAAAGCAAGGCAATAATGAGATGAAAGAAATTCAAGGTGAGAATCCAGGTTATTTAGTCCAAAGGAAGATTGTT
TCTAAAGGGACGGGACAGGTTGTAGGCTATTTACAGGCATTTTATGACACGACAACTTATCATCGGATTTCCAATCTCCT
TTTAGTCGTCTTGTTAATTTTAGAAATTGTCGCTTTAATCGTTGCGCAAATGATTGGTTATTTTATGGCGAATTATTTTA
TGAAGCCTTTAGAAAAACTTTATCAGGGAATGCAGGAAATGGCGAGCGACCCCACGAATGATTTCAAACCTATCGAAATT
GAAAGTGGTGATGAAATTGAAGAATTAGCTCATGTTTATAATGATATGATGCTGAAAATGAAAGCATACCTTGAACAGCA
AAATCGGTTTGTCTCTGATGTTTCACATGAATTAAGGACTCCGTTAGCAGTTTTGGACGGTCATATTAATCTCTTAAATC
GTTGGGGAAAAAATGATCCAGAAGTTTTGGATGAATCTTTGCAGGCGAGTTTGGATGAAGTAGACCGAATGAAGAAAATG
CTTGAAGAAATGCTTGCTTTAGCTAGGCTTGAAAATGTAGATTTGTCCAGTGAAGAATTGGATTGTGACGTTGGGAAAGT
ATCTAATCATGCGCTTAAAAACTTCCAACTTCTACATGAGGATTTTGAGATTGTGCTTGATAATCAGCTTATCTACCCTG
TCCATGCCCGGATATCTGAAAATCATTTTGAACAAGGATTACGCATTTTGTTAGATAATGCTGTTAAGTATTCTCCGGAT
GATCGAAAGGAGATTGTGATTACTGTTTCAGAAGATGAACAGTTTGTCATTACTAGTGTTTCTGATAAAGGAATCGGAAT
TGCCGAAGAAGATATTAATCATCTTTTTGAGCGATTCTTTCGAGCGGATAAGGCACGTAACCGTGAGATTGGCGGAACTG
GTTTAGGTTTACCAATTCTTGCTCGTTTAGCCGAAAATTATCAAGGGGAGATTGAAGTTAGTTCTGAGCTTGGGATTGGT
TCAACTTTTACCTTAAAATTTCCAAAAATGTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(267-332)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(380-488)

HAMP domain (HAMP)

(208-258)

ArlS sensor domain (ArlS_N)

(54-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covS Lactococcus lactis subsp. lactis strain DGCC12653

94.694

100

0.947