Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   JKV48_RS12770 Genome accession   NZ_CP068682
Coordinates   2616580..2617149 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain NCCP11854     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2611580..2622149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS12730 (JKV48_12675) - 2612054..2612662 (-) 609 WP_000020296.1 class I SAM-dependent methyltransferase -
  JKV48_RS12735 (JKV48_12680) rplL 2612837..2613205 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  JKV48_RS12740 (JKV48_12685) rplJ 2613248..2613748 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  JKV48_RS12745 (JKV48_12690) rplA 2614020..2614712 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  JKV48_RS12750 (JKV48_12695) rplK 2614920..2615342 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  JKV48_RS12755 (JKV48_12700) nusG 2615523..2616071 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  JKV48_RS12760 (JKV48_12705) secE 2616084..2616266 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  JKV48_RS12765 (JKV48_12710) rpmG 2616322..2616465 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  JKV48_RS12770 (JKV48_12715) sigH 2616580..2617149 (-) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  JKV48_RS12775 (JKV48_12720) - 2617230..2617754 (-) 525 WP_000664738.1 NYN domain-containing protein -
  JKV48_RS12780 (JKV48_12725) rlmB 2617754..2618500 (-) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JKV48_RS12785 (JKV48_12730) - 2618508..2618912 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  JKV48_RS12790 (JKV48_12735) cysS 2618905..2620305 (-) 1401 WP_000631977.1 cysteine--tRNA ligase -
  JKV48_RS12795 (JKV48_12740) cysE 2620289..2620936 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=530381 JKV48_RS12770 WP_000872872.1 2616580..2617149(-) (sigH) [Staphylococcus aureus strain NCCP11854]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=530381 JKV48_RS12770 WP_000872872.1 2616580..2617149(-) (sigH) [Staphylococcus aureus strain NCCP11854]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979