Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JKV48_RS08020 Genome accession   NZ_CP068682
Coordinates   1611130..1612104 (+) Length   324 a.a.
NCBI ID   WP_000697218.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606130..1617104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS07985 (JKV48_07940) rpmG 1606590..1606739 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  JKV48_RS07990 (JKV48_07945) - 1606948..1607487 (+) 540 WP_000164548.1 5-formyltetrahydrofolate cyclo-ligase -
  JKV48_RS07995 (JKV48_07950) - 1607499..1608962 (+) 1464 WP_235103067.1 rhomboid family protein -
  JKV48_RS08000 (JKV48_07955) - 1608943..1609146 (+) 204 WP_000087561.1 YqgQ family protein -
  JKV48_RS08005 (JKV48_07960) - 1609143..1610129 (+) 987 WP_000161315.1 ROK family glucokinase -
  JKV48_RS08010 (JKV48_07965) - 1610129..1610458 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JKV48_RS08015 (JKV48_07970) - 1610455..1611078 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JKV48_RS08020 (JKV48_07975) comGA 1611130..1612104 (+) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  JKV48_RS08025 (JKV48_07980) comGB 1612076..1613146 (+) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  JKV48_RS08030 (JKV48_07985) comGC 1613160..1613471 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JKV48_RS08035 (JKV48_07990) comGD 1613449..1613895 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  JKV48_RS08040 (JKV48_07995) comGE 1613882..1614181 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  JKV48_RS08045 (JKV48_08000) comGF 1614099..1614596 (+) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  JKV48_RS08050 (JKV48_08005) - 1614693..1614839 (+) 147 WP_001789879.1 hypothetical protein -
  JKV48_RS08055 (JKV48_08010) - 1614829..1615353 (+) 525 WP_001015116.1 shikimate kinase -
  JKV48_RS08060 (JKV48_08015) gcvT 1615512..1616603 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36970.02 Da        Isoelectric Point: 8.6529

>NTDB_id=530364 JKV48_RS08020 WP_000697218.1 1611130..1612104(+) (comGA) [Staphylococcus aureus strain NCCP11854]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQELLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=530364 JKV48_RS08020 WP_000697218.1 1611130..1612104(+) (comGA) [Staphylococcus aureus strain NCCP11854]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGAATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCCTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTAATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAGGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997