Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JKV48_RS08025 Genome accession   NZ_CP068682
Coordinates   1612076..1613146 (+) Length   356 a.a.
NCBI ID   WP_000776407.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607076..1618146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS07995 (JKV48_07950) - 1607499..1608962 (+) 1464 WP_235103067.1 rhomboid family protein -
  JKV48_RS08000 (JKV48_07955) - 1608943..1609146 (+) 204 WP_000087561.1 YqgQ family protein -
  JKV48_RS08005 (JKV48_07960) - 1609143..1610129 (+) 987 WP_000161315.1 ROK family glucokinase -
  JKV48_RS08010 (JKV48_07965) - 1610129..1610458 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JKV48_RS08015 (JKV48_07970) - 1610455..1611078 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JKV48_RS08020 (JKV48_07975) comGA 1611130..1612104 (+) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  JKV48_RS08025 (JKV48_07980) comGB 1612076..1613146 (+) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  JKV48_RS08030 (JKV48_07985) comGC 1613160..1613471 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JKV48_RS08035 (JKV48_07990) comGD 1613449..1613895 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  JKV48_RS08040 (JKV48_07995) comGE 1613882..1614181 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  JKV48_RS08045 (JKV48_08000) comGF 1614099..1614596 (+) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  JKV48_RS08050 (JKV48_08005) - 1614693..1614839 (+) 147 WP_001789879.1 hypothetical protein -
  JKV48_RS08055 (JKV48_08010) - 1614829..1615353 (+) 525 WP_001015116.1 shikimate kinase -
  JKV48_RS08060 (JKV48_08015) gcvT 1615512..1616603 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JKV48_RS08065 (JKV48_08020) gcvPA 1616623..1617969 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41465.90 Da        Isoelectric Point: 10.1030

>NTDB_id=530365 JKV48_RS08025 WP_000776407.1 1612076..1613146(+) (comGB) [Staphylococcus aureus strain NCCP11854]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIMVSILAIIMKLFYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=530365 JKV48_RS08025 WP_000776407.1 1612076..1613146(+) (comGB) [Staphylococcus aureus strain NCCP11854]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATGGTATCTATATT
GGCTATTATTATGAAATTATTTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGTTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.596

100

0.986
  comGB Staphylococcus aureus N315

98.596

100

0.986