Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLUC047_RS01975 Genome accession   NZ_CP068658
Coordinates   374707..375171 (+) Length   154 a.a.
NCBI ID   WP_080683475.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 369707..380171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC047_RS01940 (LLUC047_01915) - 370999..371295 (+) 297 WP_003132842.1 BRCT domain-containing protein -
  LLUC047_RS01945 (LLUC047_01920) - 371330..371551 (+) 222 WP_003132844.1 hypothetical protein -
  LLUC047_RS01950 (LLUC047_01925) - 371901..372455 (-) 555 WP_014570262.1 recombinase family protein -
  LLUC047_RS01955 (LLUC047_01930) - 372678..372839 (+) 162 Protein_374 IS982 family transposase -
  LLUC047_RS01960 (LLUC047_01935) - 372942..373607 (-) 666 WP_011676114.1 acetolactate decarboxylase -
  LLUC047_RS01965 (LLUC047_01940) - 373774..373854 (+) 81 Protein_376 IS6 family transposase -
  LLUC047_RS01970 (LLUC047_01945) - 373909..374589 (-) 681 WP_010890648.1 IS6-like element ISS1S family transposase -
  LLUC047_RS01975 (LLUC047_01950) coiA 374707..375171 (+) 465 WP_080683475.1 competence protein CoiA Machinery gene
  LLUC047_RS01980 (LLUC047_01955) pepF 375234..377039 (+) 1806 WP_031286803.1 oligoendopeptidase F Regulator
  LLUC047_RS01985 (LLUC047_13840) - 377042..377161 (+) 120 Protein_380 O-methyltransferase -
  LLUC047_RS01990 (LLUC047_01960) - 377148..377680 (-) 533 Protein_381 transposase -
  LLUC047_RS01995 (LLUC047_01965) - 377773..378354 (+) 582 WP_011669105.1 recombinase family protein -
  LLUC047_RS02000 (LLUC047_01970) - 378481..378582 (-) 102 WP_116368912.1 type I toxin-antitoxin system Fst family toxin -
  LLUC047_RS02005 (LLUC047_01975) - 378848..379615 (-) 768 WP_011669104.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 18605.88 Da        Isoelectric Point: 9.6137

>NTDB_id=530240 LLUC047_RS01975 WP_080683475.1 374707..375171(+) (coiA) [Lactococcus cremoris strain UC047]
MKTLIHEDLRGKIIYLQEEIPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPKWLKLQEKYYQRGENL
LNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIMKKQKKDMNE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=530240 LLUC047_RS01975 WP_080683475.1 374707..375171(+) (coiA) [Lactococcus cremoris strain UC047]
TTGAAGACACTGATTCATGAAGATTTGCGTGGGAAAATTATTTATTTACAAGAAGAAATCCCTTTTGGTCAAGGACGACT
TATTGAGCAATTACGACTGCCTTTTTTATCACAAAAGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAAT
TTATTCGTCGGCAACTTTATTATTGTTCACCAAAATGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTG
TTGAATTTGACTTTTGAACGTTCTTTTATTGCGCCTTTGGGATTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTT
ACATAAATTTACTCAAATTAAGCAGAATATTAATCTATATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTA
AGGCAGTATATCCTCCCCGTTTCTATGCTATAATGAAAAAGCAGAAGAAGGATATGAATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

69.536

98.052

0.682
  coiA Streptococcus mitis NCTC 12261

38.776

95.455

0.37