Detailed information NTG0530213

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JHS88_RS12520
• Genome accession: NZ_CP068647
• Coordinates: 2705403..2706272 (+)
• Length: 289 a.a.
• NCBI ID: WP_025524821.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain TJ-187
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2700403..2711272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS88_RS12500 (JHS88_12485)	nadC	2700806..2701693 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JHS88_RS12505 (JHS88_12490)	pilA	2701956..2702393 (+)	438	WP_021453050.1	pilin	Machinery gene
JHS88_RS12510 (JHS88_12495)	pilB	2702405..2704090 (+)	1686	WP_031845921.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JHS88_RS12515 (JHS88_12500)	pilC	2704115..2705338 (+)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
JHS88_RS12520 (JHS88_12505)	pilD	2705403..2706272 (+)	870	WP_025524821.1	prepilin peptidase	Machinery gene
JHS88_RS12525 (JHS88_12510)	coaE	2706273..2706887 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
JHS88_RS12530 (JHS88_12515)	zapD	2706915..2707655 (+)	741	WP_023624252.1	cell division protein ZapD	-
JHS88_RS12535 (JHS88_12520)	yacG	2707724..2707918 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
JHS88_RS12540 (JHS88_12525)	rplS	2708292..2708645 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
JHS88_RS12545 (JHS88_12530)	trmD	2708687..2709430 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
JHS88_RS12550 (JHS88_12535)	rimM	2709458..2710006 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
JHS88_RS12555 (JHS88_12540)	rpsP	2710035..2710283 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1971

>NTDB_id=530213 JHS88_RS12520 WP_025524821.1 2705403..2706272(+) (pilD) [Vibrio parahaemolyticus strain TJ-187]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWISLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=530213 JHS88_RS12520 WP_025524821.1 2705403..2706272(+) (pilD) [Vibrio parahaemolyticus strain TJ-187]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGATAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453