Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   JHS88_RS12470 Genome accession   NZ_CP068647
Coordinates   2691933..2692547 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJ-187     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2686933..2697547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS88_RS12450 (JHS88_12435) - 2687219..2688136 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  JHS88_RS12455 (JHS88_12440) - 2688388..2690058 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  JHS88_RS12460 (JHS88_12445) can 2690342..2691010 (+) 669 WP_005462578.1 carbonate dehydratase -
  JHS88_RS12465 (JHS88_12450) hpt 2691084..2691614 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  JHS88_RS12470 (JHS88_12455) opaR 2691933..2692547 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  JHS88_RS12475 (JHS88_12460) lpdA 2692675..2694102 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  JHS88_RS12480 (JHS88_12465) aceF 2694371..2696257 (-) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=530209 JHS88_RS12470 WP_005479697.1 2691933..2692547(+) (opaR) [Vibrio parahaemolyticus strain TJ-187]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=530209 JHS88_RS12470 WP_005479697.1 2691933..2692547(+) (opaR) [Vibrio parahaemolyticus strain TJ-187]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTTCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701