Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   JHS79_RS14390 Genome accession   NZ_CP068641
Coordinates   2892495..2893109 (+) Length   204 a.a.
NCBI ID   WP_140198817.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887495..2898109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS14370 (JHS79_14205) - 2887781..2888698 (-) 918 WP_024702450.1 ABC transporter ATP-binding protein -
  JHS79_RS14375 (JHS79_14210) - 2888950..2890620 (-) 1671 WP_025792850.1 SulP family inorganic anion transporter -
  JHS79_RS14380 (JHS79_14215) can 2890904..2891572 (+) 669 WP_005462578.1 carbonate dehydratase -
  JHS79_RS14385 (JHS79_14220) hpt 2891646..2892176 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  JHS79_RS14390 (JHS79_14225) opaR 2892495..2893109 (+) 615 WP_140198817.1 transcriptional regulator OpaR Regulator
  JHS79_RS14395 (JHS79_14230) lpdA 2893237..2894664 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  JHS79_RS14400 (JHS79_14235) aceF 2894934..2896820 (-) 1887 WP_193244062.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23607.87 Da        Isoelectric Point: 5.8297

>NTDB_id=530163 JHS79_RS14390 WP_140198817.1 2892495..2893109(+) (opaR) [Vibrio parahaemolyticus strain VP157]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELTELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=530163 JHS79_RS14390 WP_140198817.1 2892495..2893109(+) (opaR) [Vibrio parahaemolyticus strain VP157]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAC
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701