Detailed information NTG0530121

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JHT21_RS12460
• Genome accession: NZ_CP068638
• Coordinates: 2633655..2634524 (+)
• Length: 289 a.a.
• NCBI ID: WP_025501249.1
• Uniprot ID: A0AA46L6W6
• Organism: Vibrio parahaemolyticus strain VP120
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2628655..2639524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHT21_RS12440 (JHT21_12405)	nadC	2629053..2629940 (+)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JHT21_RS12445 (JHT21_12410)	-	2630204..2630656 (+)	453	WP_029846089.1	pilin	-
JHT21_RS12450 (JHT21_12415)	pilB	2630658..2632343 (+)	1686	WP_029804705.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JHT21_RS12455 (JHT21_12420)	pilC	2632367..2633590 (+)	1224	WP_029804706.1	type II secretion system F family protein	Machinery gene
JHT21_RS12460 (JHT21_12425)	pilD	2633655..2634524 (+)	870	WP_025501249.1	prepilin peptidase	Machinery gene
JHT21_RS12465 (JHT21_12430)	coaE	2634525..2635139 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
JHT21_RS12470 (JHT21_12435)	zapD	2635167..2635907 (+)	741	WP_023624252.1	cell division protein ZapD	-
JHT21_RS12475 (JHT21_12440)	yacG	2635976..2636170 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
JHT21_RS12480 (JHT21_12445)	rplS	2636585..2636938 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
JHT21_RS12485 (JHT21_12450)	trmD	2636980..2637723 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
JHT21_RS12490 (JHT21_12455)	rimM	2637751..2638299 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
JHT21_RS12495 (JHT21_12460)	rpsP	2638328..2638576 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32377.47 Da
• Isoelectric Point: 7.1970

>NTDB_id=530121 JHT21_RS12460 WP_025501249.1 2633655..2634524(+) (pilD) [Vibrio parahaemolyticus strain VP120]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=530121 JHT21_RS12460 WP_025501249.1 2633655..2634524(+) (pilD) [Vibrio parahaemolyticus strain VP120]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATTATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446