Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   JHT10_RS05215 Genome accession   NZ_CP068630
Coordinates   1166552..1167649 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain TJ-20     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161552..1172649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT10_RS05185 (JHT10_05170) - 1161688..1162665 (+) 978 WP_015313433.1 Gfo/Idh/MocA family protein -
  JHT10_RS05190 (JHT10_05175) - 1162739..1164076 (-) 1338 WP_029803881.1 MATE family efflux transporter -
  JHT10_RS05195 (JHT10_05180) - 1164199..1164513 (-) 315 WP_005453573.1 DUF496 family protein -
  JHT10_RS05200 (JHT10_05185) - 1164841..1165056 (+) 216 WP_005477197.1 hypothetical protein -
  JHT10_RS05205 (JHT10_05190) - 1165233..1165883 (+) 651 WP_017447360.1 YceH family protein -
  JHT10_RS05210 (JHT10_05195) - 1165880..1166200 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  JHT10_RS05215 (JHT10_05200) luxP 1166552..1167649 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  JHT10_RS05220 (JHT10_05205) luxQ 1167649..1170225 (+) 2577 WP_025521028.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  JHT10_RS05225 (JHT10_05210) - 1170437..1170892 (+) 456 WP_025525184.1 MarR family transcriptional regulator -
  JHT10_RS05230 (JHT10_05215) - 1170930..1171985 (+) 1056 WP_015313427.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=530058 JHT10_RS05215 WP_005463467.1 1166552..1167649(+) (luxP) [Vibrio parahaemolyticus strain TJ-20]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=530058 JHT10_RS05215 WP_005463467.1 1166552..1167649(+) (luxP) [Vibrio parahaemolyticus strain TJ-20]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAGATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCTGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCAGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATTAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644