Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   JHS95_RS02955 Genome accession   NZ_CP068627
Coordinates   605511..606125 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 600511..611125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS02945 (JHS95_02950) aceF 601787..603673 (+) 1887 WP_237301939.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  JHS95_RS02950 (JHS95_02955) lpdA 603956..605383 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  JHS95_RS02955 (JHS95_02960) opaR 605511..606125 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  JHS95_RS02960 (JHS95_02965) hpt 606444..606974 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  JHS95_RS02965 (JHS95_02970) can 607048..607716 (-) 669 WP_005462578.1 carbonate dehydratase -
  JHS95_RS02970 (JHS95_02975) - 608000..609670 (+) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  JHS95_RS02975 (JHS95_02980) - 609922..610839 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=530031 JHS95_RS02955 WP_005479697.1 605511..606125(-) (opaR) [Vibrio parahaemolyticus strain LH80]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=530031 JHS95_RS02955 WP_005479697.1 605511..606125(-) (opaR) [Vibrio parahaemolyticus strain LH80]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCCAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701