Detailed information NTG0530028

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JHS95_RS02905
• Genome accession: NZ_CP068627
• Coordinates: 591793..592662 (-)
• Length: 289 a.a.
• NCBI ID: WP_237301937.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LH80
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 586793..597662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS95_RS02870 (JHS95_02875)	rpsP	587828..588076 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
JHS95_RS02875 (JHS95_02880)	rimM	588105..588653 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
JHS95_RS02880 (JHS95_02885)	trmD	588681..589424 (+)	744	WP_140307233.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
JHS95_RS02885 (JHS95_02890)	rplS	589466..589819 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
JHS95_RS02890 (JHS95_02895)	yacG	590147..590341 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
JHS95_RS02895 (JHS95_02900)	zapD	590410..591150 (-)	741	WP_237301936.1	cell division protein ZapD	-
JHS95_RS02900 (JHS95_02905)	coaE	591178..591792 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
JHS95_RS02905 (JHS95_02910)	pilD	591793..592662 (-)	870	WP_237301937.1	prepilin peptidase	Machinery gene
JHS95_RS02910 (JHS95_02915)	pilC	592727..593950 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
JHS95_RS02915 (JHS95_02920)	pilB	593974..595659 (-)	1686	WP_237301938.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JHS95_RS02920 (JHS95_02925)	-	595664..596089 (-)	426	WP_140311744.1	type IV pilin protein	-
JHS95_RS02925 (JHS95_02930)	nadC	596351..597238 (-)	888	WP_140311742.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32365.42 Da
• Isoelectric Point: 7.1970

>NTDB_id=530028 JHS95_RS02905 WP_237301937.1 591793..592662(-) (pilD) [Vibrio parahaemolyticus strain LH80]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFSLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=530028 JHS95_RS02905 WP_237301937.1 591793..592662(-) (pilD) [Vibrio parahaemolyticus strain LH80]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTTCCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446