Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JL104_RS04225 Genome accession   NZ_CP068576
Coordinates   905129..905548 (+) Length   139 a.a.
NCBI ID   WP_002507087.1    Uniprot ID   A0A1E5TFZ6
Organism   Staphylococcus equorum strain KS1030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 900129..910548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL104_RS04195 atpD 900167..901579 (+) 1413 WP_002507081.1 F0F1 ATP synthase subunit beta -
  JL104_RS04200 - 901599..902003 (+) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  JL104_RS04205 - 902326..902559 (+) 234 WP_002507083.1 DUF1146 family protein -
  JL104_RS04210 murA 902666..903931 (+) 1266 WP_002507084.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JL104_RS04215 fabZ 903989..904429 (+) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JL104_RS04220 - 904498..904938 (-) 441 WP_202809222.1 YwpF-like family protein -
  JL104_RS04225 ssb 905129..905548 (+) 420 WP_002507087.1 single-stranded DNA-binding protein Machinery gene
  JL104_RS04230 - 906032..906712 (+) 681 WP_202809223.1 transglycosylase family protein -
  JL104_RS04235 tenA 907105..907794 (+) 690 WP_202809224.1 thiaminase II -
  JL104_RS04240 thiD 907787..908608 (+) 822 WP_002507090.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JL104_RS04245 thiM 908601..909392 (+) 792 WP_069819326.1 hydroxyethylthiazole kinase -
  JL104_RS04250 thiE 909392..910030 (+) 639 WP_002507092.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16259.49 Da        Isoelectric Point: 4.8624

>NTDB_id=529629 JL104_RS04225 WP_002507087.1 905129..905548(+) (ssb) [Staphylococcus equorum strain KS1030]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=529629 JL104_RS04225 WP_002507087.1 905129..905548(+) (ssb) [Staphylococcus equorum strain KS1030]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5TFZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

61.594

99.281

0.612
  ssb Staphylococcus aureus MW2

60.87

99.281

0.604