Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JL477_RS03095 Genome accession   NZ_CP068567
Coordinates   589719..590492 (+) Length   257 a.a.
NCBI ID   WP_167842727.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 584719..595492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS03080 (JL477_03080) - 585568..587502 (-) 1935 WP_212147147.1 RNB domain-containing ribonuclease -
  JL477_RS03085 (JL477_03085) ilvC 587621..588643 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  JL477_RS03090 (JL477_03090) - 588647..589729 (+) 1083 WP_126207842.1 divergent polysaccharide deacetylase family protein -
  JL477_RS03095 (JL477_03095) dprA 589719..590492 (+) 774 WP_167842727.1 DNA-processing protein DprA Machinery gene
  JL477_RS03100 (JL477_03100) ruvX 590489..590872 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  JL477_RS03105 (JL477_03105) - 590901..591740 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JL477_RS03110 (JL477_03110) msrA 591916..592413 (-) 498 WP_070316425.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JL477_RS03115 (JL477_03115) ppa 592455..592973 (-) 519 WP_002871349.1 inorganic diphosphatase -
  JL477_RS03120 (JL477_03120) adk 592983..593561 (-) 579 WP_052794065.1 adenylate kinase -
  JL477_RS03125 (JL477_03125) aspS 593558..595309 (-) 1752 WP_167842728.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28730.46 Da        Isoelectric Point: 7.6510

>NTDB_id=529579 JL477_RS03095 WP_167842727.1 589719..590492(+) (dprA) [Campylobacter jejuni strain CC19PF065]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRTSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDETLKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=529579 JL477_RS03095 WP_167842727.1 589719..590492(+) (dprA) [Campylobacter jejuni strain CC19PF065]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTACGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGACTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

48.75

93.385

0.455