Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   JL477_RS02910 Genome accession   NZ_CP068567
Coordinates   548975..549625 (-) Length   216 a.a.
NCBI ID   WP_070252512.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 543975..554625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS02875 (JL477_02875) - 544364..545368 (+) 1005 WP_212147188.1 hypothetical protein -
  JL477_RS02880 (JL477_02880) tlyA 545365..546126 (+) 762 WP_212147132.1 TlyA family RNA methyltransferase -
  JL477_RS02885 (JL477_02885) ribF 546092..546946 (+) 855 WP_044261254.1 bifunctional riboflavin kinase/FAD synthetase -
  JL477_RS02890 (JL477_02890) cmoA 546933..547643 (+) 711 WP_079460098.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  JL477_RS02895 (JL477_02895) - 547633..547848 (-) 216 WP_052817280.1 EexN family lipoprotein -
  JL477_RS02900 (JL477_02900) - 547845..548273 (-) 429 WP_044261251.1 EexN family lipoprotein -
  JL477_RS02905 (JL477_02905) - 548332..548964 (-) 633 WP_212147134.1 trimeric intracellular cation channel family protein -
  JL477_RS02910 (JL477_02910) CJE0566 548975..549625 (-) 651 WP_070252512.1 DNA/RNA non-specific endonuclease Regulator
  JL477_RS02915 (JL477_02915) nth 549622..550248 (-) 627 WP_002861300.1 endonuclease III -
  JL477_RS02920 (JL477_02920) peb4 550329..551150 (+) 822 WP_070306313.1 peptidylprolyl isomerase PEB4 -
  JL477_RS02925 (JL477_02925) fbaA 551150..552214 (+) 1065 WP_052794082.1 class II fructose-bisphosphate aldolase -
  JL477_RS02930 (JL477_02930) - 552309..553751 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25514.40 Da        Isoelectric Point: 9.8187

>NTDB_id=529578 JL477_RS02910 WP_070252512.1 548975..549625(-) (CJE0566) [Campylobacter jejuni strain CC19PF065]
MKIFIFLLVISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEALNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERTLALKFQSIEVLN
LVLYDKEPRYIKNRIAIPSFYIKIIKTSKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=529578 JL477_RS02910 WP_070252512.1 548975..549625(-) (CJE0566) [Campylobacter jejuni strain CC19PF065]
ATGAAAATTTTCATCTTTTTACTCGTTATATCTCTTAATATTTTCGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTACAAACTCAAAG
GTACAAAAGCTGTTGCTTATAAAGTAGAAGCTTTAAATTTAAAAGATAAGCAAATTAAAAAACGTCCACGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTATACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGCAAGGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATAACCCCACAAATTGCTCAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAACTTTAGCTTTAAAATTTCAAAGCATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACGATACATTAAAAACCGTATTGCTATACCAAGTTTTTATATAAAAATTATTAAAAC
TTCAAAATTTAAAGAATGTTATCAAGTGCCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634