Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JMJ69_RS06290 Genome accession   NZ_CP068566
Coordinates   1210612..1211382 (-) Length   256 a.a.
NCBI ID   WP_052777121.1    Uniprot ID   A0A5Y7F2Y7
Organism   Campylobacter coli strain CC19DZ037     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1205612..1216382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ69_RS06260 (JMJ69_06260) aspS 1205748..1207499 (+) 1752 WP_085839027.1 aspartate--tRNA ligase -
  JMJ69_RS06265 (JMJ69_06265) - 1207496..1208071 (+) 576 WP_002781658.1 adenylate kinase -
  JMJ69_RS06270 (JMJ69_06270) ppa 1208081..1208599 (+) 519 WP_002776378.1 inorganic diphosphatase -
  JMJ69_RS06275 (JMJ69_06275) msrA 1208647..1209147 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JMJ69_RS06280 (JMJ69_06280) - 1209370..1210224 (-) 855 WP_370530282.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JMJ69_RS06285 (JMJ69_06285) ruvX 1210235..1210615 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  JMJ69_RS06290 (JMJ69_06290) dprA 1210612..1211382 (-) 771 WP_052777121.1 DNA-processing protein DprA Machinery gene
  JMJ69_RS06295 (JMJ69_06295) - 1211372..1212424 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  JMJ69_RS06300 (JMJ69_06300) ilvC 1212427..1213449 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  JMJ69_RS06305 (JMJ69_06305) - 1213572..1215506 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28844.25 Da        Isoelectric Point: 5.0727

>NTDB_id=529567 JMJ69_RS06290 WP_052777121.1 1210612..1211382(-) (dprA) [Campylobacter coli strain CC19DZ037]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=529567 JMJ69_RS06290 WP_052777121.1 1210612..1211382(-) (dprA) [Campylobacter coli strain CC19DZ037]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCTCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y7F2Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

47.917

93.75

0.449