Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   K7G42_RS09575 Genome accession   NZ_CP082783
Coordinates   1806866..1807900 (-) Length   344 a.a.
NCBI ID   WP_003107548.1    Uniprot ID   A0ABN0IRB3
Organism   Streptococcus parauberis strain KRS02083     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801866..1812900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS09540 (K7G42_09470) - 1802653..1802955 (-) 303 WP_003103628.1 YlxQ-related RNA-binding protein -
  K7G42_RS09545 (K7G42_09475) rnpM 1802948..1803244 (-) 297 WP_003104517.1 RNase P modulator RnpM -
  K7G42_RS09550 (K7G42_09480) nusA 1803260..1804414 (-) 1155 WP_003108096.1 transcription termination factor NusA -
  K7G42_RS09555 (K7G42_09485) rimP 1804503..1804985 (-) 483 WP_003107545.1 ribosome maturation factor RimP -
  K7G42_RS09565 (K7G42_09495) trmB 1805379..1806014 (-) 636 WP_003107546.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K7G42_RS09570 (K7G42_09500) ccrZ 1806014..1806805 (-) 792 WP_003107547.1 cell cycle regulator CcrZ -
  K7G42_RS09575 (K7G42_09505) pptB 1806866..1807900 (-) 1035 WP_003107548.1 ABC transporter permease Regulator
  K7G42_RS09580 (K7G42_09510) pptA 1807903..1808628 (-) 726 WP_003105648.1 ABC transporter ATP-binding protein Regulator
  K7G42_RS09585 (K7G42_09515) - 1808890..1809309 (+) 420 WP_003108095.1 HIT family protein -
  K7G42_RS09590 (K7G42_09520) - 1809306..1809608 (+) 303 WP_003108094.1 hypothetical protein -
  K7G42_RS09595 (K7G42_09525) brpA 1809641..1810930 (-) 1290 WP_003108093.1 biofilm formation/cell division transcriptional regulator BrpA -
  K7G42_RS09600 (K7G42_09530) - 1810939..1811463 (-) 525 WP_003107553.1 GNAT family N-acetyltransferase -
  K7G42_RS09605 (K7G42_09535) tsaE 1811450..1811899 (-) 450 WP_003103132.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40045.75 Da        Isoelectric Point: 9.9510

>NTDB_id=529262 K7G42_RS09575 WP_003107548.1 1806866..1807900(-) (pptB) [Streptococcus parauberis strain KRS02083]
MEELFKKRKQDFQKLHRKYLPYVLNDHFVLVLVFLLGYVLYQYSQLLRHFPENHWPIIICLILLTFFLLQVGSVATYLEE
ADRQFLLAKENQLITYIDRAGRHSFVSGTVIQSVCLALLFPIFARLGLSLTLFVLMLVLLAGLKWLIQKRKVAALMADSG
LNWDASIVSEKRRKQQILKFYSLFVNVKGVSTSVKERSYLNPLLRTVEKKSGSHWLNLFARAFLRSSDYLGLYIRLTFLA
LLSLIFISNDYLSMALALIFDYLLLFQLLSLYHHFDYHYLSILYPEDSKQKKADLLKLLRGLSLVLLIIEIGFTGNFINA
VIMTIFFGVIAYLYLPYKLKNIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=529262 K7G42_RS09575 WP_003107548.1 1806866..1807900(-) (pptB) [Streptococcus parauberis strain KRS02083]
ATGGAAGAATTGTTTAAAAAACGAAAGCAGGACTTTCAAAAACTTCATCGTAAGTACCTCCCCTATGTTCTGAATGATCA
TTTTGTGCTTGTACTAGTCTTTTTATTAGGCTATGTTTTATATCAATATAGCCAACTCTTGCGCCATTTTCCTGAAAATC
ACTGGCCAATTATTATTTGTCTAATTTTATTAACCTTCTTTTTATTACAGGTTGGCTCTGTGGCGACATATTTGGAAGAG
GCTGACCGTCAGTTCTTGCTTGCCAAAGAAAATCAACTGATTACCTATATAGACAGAGCTGGGCGTCACTCATTTGTTAG
TGGAACTGTGATTCAAAGCGTTTGTTTAGCTCTGCTATTCCCCATCTTCGCAAGACTTGGCCTATCGCTGACGCTCTTTG
TTCTCATGTTGGTACTCTTAGCTGGTTTGAAGTGGTTGATCCAGAAAAGGAAAGTAGCTGCGCTGATGGCCGATAGTGGC
TTGAATTGGGATGCTAGTATTGTCAGTGAGAAAAGACGAAAGCAACAAATTCTGAAGTTTTATTCCCTTTTTGTAAATGT
CAAGGGTGTATCCACCAGTGTAAAAGAAAGATCTTACTTAAATCCGCTTTTAAGAACTGTTGAAAAAAAATCAGGCTCAC
ATTGGCTCAATCTCTTTGCGCGTGCTTTTTTGCGAAGCTCAGATTATCTTGGTCTCTATATTAGATTAACCTTTTTAGCA
TTATTATCACTAATATTTATTAGTAATGATTATTTATCAATGGCTTTGGCGTTGATTTTTGACTACCTTTTATTATTTCA
ATTGCTGTCACTATATCATCATTTTGACTATCATTACTTATCAATTTTATATCCGGAAGATAGTAAGCAAAAGAAAGCTG
ATTTACTCAAATTATTACGAGGGCTATCTTTGGTTTTATTGATCATAGAGATTGGATTTACAGGCAATTTCATAAATGCT
GTAATCATGACTATCTTCTTTGGGGTAATAGCCTATCTCTATTTGCCTTATAAGTTAAAGAACATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-315)

Bacterial ABC transporter protein EcsB (EcsB)

(3-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.605

100

0.436
  pptB Streptococcus salivarius strain HSISS4

42.151

100

0.422