Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   K7G42_RS01110 Genome accession   NZ_CP082783
Coordinates   177479..177778 (+) Length   99 a.a.
NCBI ID   WP_003108643.1    Uniprot ID   A0ABN0IPE1
Organism   Streptococcus parauberis strain KRS02083     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172479..182778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS01080 (K7G42_01070) - 174802..174948 (+) 147 WP_003108648.1 hypothetical protein -
  K7G42_RS01085 (K7G42_01075) - 174955..175410 (+) 456 WP_003108647.1 phage holin family protein -
  K7G42_RS11735 (K7G42_01080) - 175412..176137 (+) 726 WP_003108646.1 peptidoglycan amidohydrolase family protein -
  K7G42_RS01100 (K7G42_01085) comGC 176790..177110 (+) 321 WP_003108645.1 competence type IV pilus major pilin ComGC Machinery gene
  K7G42_RS01105 (K7G42_01090) comGD 177100..177507 (+) 408 WP_243619590.1 competence type IV pilus minor pilin ComGD Machinery gene
  K7G42_RS01110 (K7G42_01095) comGE 177479..177778 (+) 300 WP_003108643.1 competence type IV pilus minor pilin ComGE Machinery gene
  K7G42_RS01115 (K7G42_01100) comGF/cglF 177756..178193 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  K7G42_RS01120 (K7G42_01105) comGG 178171..178668 (+) 498 WP_003108640.1 competence type IV pilus minor pilin ComGG -
  K7G42_RS01125 (K7G42_01110) comGH 178775..179731 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  K7G42_RS01130 (K7G42_01115) - 179787..180980 (+) 1194 WP_003108638.1 acetate kinase -
  K7G42_RS01135 (K7G42_01120) - 181091..181303 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  K7G42_RS01140 (K7G42_01125) - 181296..181748 (+) 453 WP_003108634.1 hypothetical protein -
  K7G42_RS01145 (K7G42_01130) - 181757..182410 (+) 654 WP_003108632.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11320.33 Da        Isoelectric Point: 8.4617

>NTDB_id=529191 K7G42_RS01110 WP_003108643.1 177479..177778(+) (comGE) [Streptococcus parauberis strain KRS02083]
MVLIKKQKIKGYILFESLLALGILVYIVLVILGAIEQYQQLHNRYIQEEEALNAAISAIQTQKDSLAINNVEIIVHSTAK
EMRVNDKRKELFHVTKISD

Nucleotide


Download         Length: 300 bp        

>NTDB_id=529191 K7G42_RS01110 WP_003108643.1 177479..177778(+) (comGE) [Streptococcus parauberis strain KRS02083]
GTGGTACTTATAAAAAAACAAAAAATTAAAGGTTATATCCTTTTTGAAAGTCTTCTTGCTTTAGGTATTCTTGTTTATAT
TGTATTAGTTATTTTAGGCGCAATTGAGCAATATCAACAACTTCATAATCGGTACATACAGGAAGAAGAGGCTCTAAATG
CTGCAATATCAGCTATTCAGACTCAAAAGGACAGTCTGGCTATTAATAATGTAGAAATTATTGTTCATTCAACAGCAAAG
GAAATGAGAGTCAATGACAAAAGAAAAGAGTTGTTTCATGTTACAAAAATTAGTGACTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.75

96.97

0.424
  comGE Streptococcus mutans UA159

43.75

96.97

0.424