Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K8B92_RS17265 Genome accession   NZ_CP082776
Coordinates   3585614..3586351 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O4:H5 strain CU532-9     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3580614..3591351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B92_RS17250 (K8B92_17170) clpC 3581068..3583641 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K8B92_RS17255 (K8B92_17175) yfiH 3583771..3584502 (-) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  K8B92_RS17260 (K8B92_17180) rluD 3584499..3585479 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B92_RS17265 (K8B92_17185) comL 3585614..3586351 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K8B92_RS17270 (K8B92_17190) raiA 3586621..3586962 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K8B92_RS17275 (K8B92_17195) pheL 3587066..3587113 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K8B92_RS17280 (K8B92_17200) pheA 3587212..3588372 (+) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  K8B92_RS17285 (K8B92_17205) tyrA 3588415..3589536 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K8B92_RS17290 (K8B92_17210) aroF 3589547..3590617 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K8B92_RS17295 (K8B92_17215) yfiL 3590827..3591192 (+) 366 WP_000976008.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=528967 K8B92_RS17265 WP_000197686.1 3585614..3586351(+) (comL) [Escherichia coli O4:H5 strain CU532-9]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=528967 K8B92_RS17265 WP_000197686.1 3585614..3586351(+) (comL) [Escherichia coli O4:H5 strain CU532-9]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376