Detailed information NTG0528882

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JHW28_RS26770
• Genome accession: NZ_CP068390
• Coordinates: 5973508..5974836 (+)
• Length: 442 a.a.
• NCBI ID: WP_202338932.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain YS21
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5968508..5979836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW28_RS26750 (JHW28_26750)	pgeF	5970007..5970732 (-)	726	WP_162096133.1	peptidoglycan editing factor PgeF	-
JHW28_RS26755 (JHW28_26755)	rluD	5970729..5971691 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
JHW28_RS26760 (JHW28_26760)	-	5971844..5972866 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
JHW28_RS26765 (JHW28_26765)	-	5973001..5973234 (+)	234	WP_007924721.1	PP0621 family protein	-
JHW28_RS26770 (JHW28_26770)	pilR	5973508..5974836 (+)	1329	WP_202338932.1	sigma-54-dependent transcriptional regulator	Regulator
JHW28_RS26775 (JHW28_26775)	thiO	5974833..5975933 (-)	1101	WP_162096136.1	glycine oxidase ThiO	-
JHW28_RS26780 (JHW28_26780)	-	5975988..5976389 (-)	402	WP_038575642.1	type IV pilin protein	-
JHW28_RS26785 (JHW28_26785)	-	5976403..5979471 (-)	3069	WP_202338933.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48710.99 Da
• Isoelectric Point: 8.2728

>NTDB_id=528882 JHW28_RS26770 WP_202338932.1 5973508..5974836(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALARLRELLNGTLPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVNAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=528882 JHW28_RS26770 WP_202338932.1 5973508..5974836(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAATGGCACCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGAGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAAGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAGGTGAATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGTC
TGAACGTAATCGAGTTGGCGGTGCCACCGCTAAGGGCACGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGTGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.817	100	0.67
pilR	Acinetobacter baumannii strain A118	44.227	100	0.459