Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JHW28_RS08705 Genome accession   NZ_CP068390
Coordinates   1937549..1938184 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain YS21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932549..1943184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW28_RS08685 (JHW28_08685) - 1932794..1933726 (+) 933 WP_053268526.1 ABC transporter ATP-binding protein -
  JHW28_RS08690 (JHW28_08690) - 1933723..1934502 (+) 780 WP_007931651.1 ABC transporter permease -
  JHW28_RS08695 (JHW28_08695) - 1934551..1935066 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  JHW28_RS08700 (JHW28_08700) comA 1935215..1937446 (+) 2232 WP_162094667.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JHW28_RS08705 (JHW28_08705) exbB 1937549..1938184 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JHW28_RS08710 (JHW28_08710) - 1938181..1938609 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  JHW28_RS08715 (JHW28_08715) lpxK 1938609..1939619 (+) 1011 WP_124336242.1 tetraacyldisaccharide 4'-kinase -
  JHW28_RS08720 (JHW28_08720) - 1939643..1939828 (+) 186 WP_007931663.1 Trm112 family protein -
  JHW28_RS08725 (JHW28_08725) kdsB 1939825..1940589 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JHW28_RS08730 (JHW28_08730) - 1940589..1941053 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  JHW28_RS08735 (JHW28_08735) murB 1941050..1942069 (+) 1020 WP_162094668.1 UDP-N-acetylmuramate dehydrogenase -
  JHW28_RS08740 (JHW28_08740) - 1942318..1942788 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=528872 JHW28_RS08705 WP_007931657.1 1937549..1938184(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=528872 JHW28_RS08705 WP_007931657.1 1937549..1938184(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCTGCCATGGCGCCGCTGCTAGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACTACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867