Detailed information NTG0528871

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JHW28_RS08700
• Genome accession: NZ_CP068390
• Coordinates: 1935215..1937446 (+)
• Length: 743 a.a.
• NCBI ID: WP_162094667.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain YS21
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1930215..1942446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW28_RS08675 (JHW28_08675)	-	1931336..1931995 (+)	660	WP_038580923.1	transglutaminase-like domain-containing protein	-
JHW28_RS08680 (JHW28_08680)	-	1932038..1932661 (+)	624	WP_124307981.1	glutathione S-transferase family protein	-
JHW28_RS08685 (JHW28_08685)	-	1932794..1933726 (+)	933	WP_053268526.1	ABC transporter ATP-binding protein	-
JHW28_RS08690 (JHW28_08690)	-	1933723..1934502 (+)	780	WP_007931651.1	ABC transporter permease	-
JHW28_RS08695 (JHW28_08695)	-	1934551..1935066 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
JHW28_RS08700 (JHW28_08700)	comA	1935215..1937446 (+)	2232	WP_162094667.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JHW28_RS08705 (JHW28_08705)	exbB	1937549..1938184 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JHW28_RS08710 (JHW28_08710)	-	1938181..1938609 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
JHW28_RS08715 (JHW28_08715)	lpxK	1938609..1939619 (+)	1011	WP_124336242.1	tetraacyldisaccharide 4'-kinase	-
JHW28_RS08720 (JHW28_08720)	-	1939643..1939828 (+)	186	WP_007931663.1	Trm112 family protein	-
JHW28_RS08725 (JHW28_08725)	kdsB	1939825..1940589 (+)	765	WP_016702178.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JHW28_RS08730 (JHW28_08730)	-	1940589..1941053 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
JHW28_RS08735 (JHW28_08735)	murB	1941050..1942069 (+)	1020	WP_162094668.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81243.40 Da
• Isoelectric Point: 10.0460

>NTDB_id=528871 JHW28_RS08700 WP_162094667.1 1935215..1937446(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLTVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=528871 JHW28_RS08700 WP_162094667.1 1935215..1937446(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAGCTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCTTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGCGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGCGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCCTC
GGCCCTGGGGTACGGATTGCTGGCGGGTTTCGACGTGCCGGTGCGTCGCGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGACGGTGCCCTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTTTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCATTGCGCAAGCTGGGCATTGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCG
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGCCCTGGCGGAG
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.839	96.77	0.618