Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JKL50_RS04670 Genome accession   NZ_CP068389
Coordinates   876446..877348 (-) Length   300 a.a.
NCBI ID   WP_041090524.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 871446..882348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS04655 (JKL50_04655) xerC 871821..872738 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  JKL50_RS04660 (JKL50_04660) trmFO 872801..874105 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JKL50_RS04665 (JKL50_04665) topA 874176..876251 (-) 2076 WP_008344821.1 type I DNA topoisomerase -
  JKL50_RS04670 (JKL50_04670) dprA 876446..877348 (-) 903 WP_041090524.1 DNA-processing protein DprA Machinery gene
  JKL50_RS04675 (JKL50_04675) sucD 877412..878314 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  JKL50_RS04680 (JKL50_04680) sucC 878337..879497 (-) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  JKL50_RS04685 (JKL50_04685) - 879664..879939 (-) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  JKL50_RS04690 (JKL50_04690) - 879936..881672 (-) 1737 WP_019744160.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34059.40 Da        Isoelectric Point: 8.2776

>NTDB_id=528817 JKL50_RS04670 WP_041090524.1 876446..877348(-) (dprA) [Bacillus altitudinis strain ws31]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=528817 JKL50_RS04670 WP_041090524.1 876446..877348(-) (dprA) [Bacillus altitudinis strain ws31]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGTGTGCCATCCTCTTACGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGTGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
ACCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38