Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K8B88_RS18355 Genome accession   NZ_CP082774
Coordinates   3747118..3747855 (+) Length   245 a.a.
NCBI ID   WP_021524442.1    Uniprot ID   -
Organism   Escherichia coli O16:H6 strain CU37RT-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3742118..3752855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B88_RS18340 (K8B88_18265) clpC 3742572..3745145 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K8B88_RS18345 (K8B88_18270) yfiH 3745275..3746006 (-) 732 WP_021524441.1 purine nucleoside phosphorylase YfiH -
  K8B88_RS18350 (K8B88_18275) rluD 3746003..3746983 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B88_RS18355 (K8B88_18280) comL 3747118..3747855 (+) 738 WP_021524442.1 outer membrane protein assembly factor BamD Machinery gene
  K8B88_RS18360 (K8B88_18285) raiA 3748125..3748466 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K8B88_RS18365 (K8B88_18290) pheL 3748570..3748617 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K8B88_RS18370 (K8B88_18295) pheA 3748716..3749876 (+) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  K8B88_RS18375 (K8B88_18300) tyrA 3749919..3751040 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K8B88_RS18380 (K8B88_18305) aroF 3751051..3752121 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K8B88_RS18385 (K8B88_18310) yfiL 3752332..3752697 (+) 366 WP_000976008.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27855.48 Da        Isoelectric Point: 6.4874

>NTDB_id=528795 K8B88_RS18355 WP_021524442.1 3747118..3747855(+) (comL) [Escherichia coli O16:H6 strain CU37RT-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NISNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=528795 K8B88_RS18355 WP_021524442.1 3747118..3747855(+) (comL) [Escherichia coli O16:H6 strain CU37RT-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACATCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

37.903

100

0.384
  comL Neisseria gonorrhoeae MS11

37.097

100

0.376