Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K8B87_RS17115 Genome accession   NZ_CP082773
Coordinates   3581192..3581929 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O99:H6 strain CU42ET-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3576192..3586929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B87_RS17100 (K8B87_17065) clpC 3576646..3579219 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K8B87_RS17105 (K8B87_17070) yfiH 3579349..3580080 (-) 732 WP_000040145.1 purine nucleoside phosphorylase YfiH -
  K8B87_RS17110 (K8B87_17075) rluD 3580077..3581057 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B87_RS17115 (K8B87_17080) comL 3581192..3581929 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K8B87_RS17120 (K8B87_17085) raiA 3582199..3582540 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K8B87_RS17125 (K8B87_17090) pheL 3582644..3582691 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K8B87_RS17130 (K8B87_17095) pheA 3582790..3583950 (+) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  K8B87_RS17135 (K8B87_17100) tyrA 3583993..3585114 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K8B87_RS17140 (K8B87_17105) aroF 3585125..3586195 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K8B87_RS17145 (K8B87_17110) yfiL 3586405..3586770 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=528706 K8B87_RS17115 WP_000197686.1 3581192..3581929(+) (comL) [Escherichia coli O99:H6 strain CU42ET-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=528706 K8B87_RS17115 WP_000197686.1 3581192..3581929(+) (comL) [Escherichia coli O99:H6 strain CU42ET-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376