Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABCA12_RS14645 Genome accession   NZ_CP068253
Coordinates   3065016..3066446 (+) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain CAM121     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3060016..3071446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS14625 (ABCA12_2987) - 3060727..3061341 (-) 615 WP_151723039.1 DUF6915 family protein -
  ABCA12_RS14630 (ABCA12_2988) pbpG 3061505..3062566 (-) 1062 WP_004917016.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABCA12_RS14635 (ABCA12_2989) - 3062778..3063413 (+) 636 WP_194596785.1 response regulator -
  ABCA12_RS14640 (ABCA12_2991) - 3063429..3064993 (+) 1565 Protein_2865 sensor histidine kinase -
  ABCA12_RS14645 (ABCA12_2992) pilR 3065016..3066446 (+) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  ABCA12_RS14650 (ABCA12_2993) - 3066485..3067660 (-) 1176 WP_194596787.1 S41 family peptidase -
  ABCA12_RS14655 (ABCA12_2994) gpmI 3067670..3069214 (-) 1545 WP_151723043.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABCA12_RS14660 (ABCA12_2995) lptG 3069334..3070404 (-) 1071 WP_151723047.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=528646 ABCA12_RS14645 WP_004917021.1 3065016..3066446(+) (pilR) [Acinetobacter junii strain CAM121]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=528646 ABCA12_RS14645 WP_004917021.1 3065016..3066446(+) (pilR) [Acinetobacter junii strain CAM121]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGTCTTGATCTTGTCAAACATGTGACTCAAAACTATCCAAACACACCAATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGGGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCCGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGGCGTTCAGCTCCTATTCAGCAATTACGCATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATCACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGTCTTATCTTATCGGCACACGGTGGCAGCCTTTTTTTAGATGAA
ATTGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCTCCACTTCGTGAACGTGGTCAAGATATCTTAATA
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGAGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAACGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49