Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABCA12_RS02130 Genome accession   NZ_CP068253
Coordinates   442480..443139 (-) Length   219 a.a.
NCBI ID   WP_005403261.1    Uniprot ID   D0SN63
Organism   Acinetobacter junii strain CAM121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437480..448139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS02095 (ABCA12_0424) - 438137..438811 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABCA12_RS02100 (ABCA12_0425) - 438831..439463 (+) 633 WP_201898015.1 phospholipid-binding protein MlaC -
  ABCA12_RS02105 (ABCA12_0426) - 439475..439762 (+) 288 WP_004964385.1 lipid asymmetry maintenance protein MlaB -
  ABCA12_RS02110 (ABCA12_0427) - 439817..440344 (-) 528 WP_201898016.1 hypothetical protein -
  ABCA12_RS02115 (ABCA12_0428) - 440346..441359 (-) 1014 WP_004964376.1 magnesium and cobalt transport protein CorA -
  ABCA12_RS02120 (ABCA12_0429) - 441510..442094 (+) 585 WP_004964372.1 TIGR00730 family Rossman fold protein -
  ABCA12_RS02125 (ABCA12_0430) - 442104..442490 (+) 387 WP_125272282.1 NUDIX hydrolase -
  ABCA12_RS02130 (ABCA12_0431) comF 442480..443139 (-) 660 WP_005403261.1 ComF family protein Machinery gene
  ABCA12_RS02135 (ABCA12_0432) recG 443132..445177 (-) 2046 WP_125272281.1 ATP-dependent DNA helicase RecG -
  ABCA12_RS02140 (ABCA12_0433) - 445197..446015 (+) 819 WP_004964357.1 NAD-dependent epimerase/dehydratase family protein -
  ABCA12_RS02145 (ABCA12_0434) - 446140..447105 (+) 966 WP_004964356.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25003.22 Da        Isoelectric Point: 8.8068

>NTDB_id=528625 ABCA12_RS02130 WP_005403261.1 442480..443139(-) (comF) [Acinetobacter junii strain CAM121]
MFKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILVACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=528625 ABCA12_RS02130 WP_005403261.1 442480..443139(-) (comF) [Acinetobacter junii strain CAM121]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTGTTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGATTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0SN63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.115

95.434

0.612
  comF Acinetobacter baumannii D1279779

63.636

95.434

0.607