Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K8B90_RS16960 Genome accession   NZ_CP082771
Coordinates   3517645..3518382 (+) Length   245 a.a.
NCBI ID   WP_000197693.1    Uniprot ID   -
Organism   Escherichia coli LF82     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3512645..3523382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B90_RS16945 (K8B90_16870) clpC 3513099..3515672 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  K8B90_RS16950 (K8B90_16875) yfiH 3515802..3516533 (-) 732 WP_000040160.1 purine nucleoside phosphorylase YfiH -
  K8B90_RS16955 (K8B90_16880) rluD 3516530..3517510 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B90_RS16960 (K8B90_16885) comL 3517645..3518382 (+) 738 WP_000197693.1 outer membrane protein assembly factor BamD Machinery gene
  K8B90_RS16965 (K8B90_16890) raiA 3518653..3518994 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K8B90_RS16970 (K8B90_16895) pheL 3519098..3519145 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K8B90_RS16975 (K8B90_16900) pheA 3519244..3520404 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  K8B90_RS16980 (K8B90_16905) tyrA 3520447..3521568 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K8B90_RS16985 (K8B90_16910) aroF 3521579..3522649 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K8B90_RS16990 (K8B90_16915) yfiL 3522859..3523224 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27857.45 Da        Isoelectric Point: 6.4874

>NTDB_id=528534 K8B90_RS16960 WP_000197693.1 3517645..3518382(+) (comL) [Escherichia coli LF82]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAVIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=528534 K8B90_RS16960 WP_000197693.1 3517645..3518382(+) (comL) [Escherichia coli LF82]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGTCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371