Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JG554_RS07945 Genome accession   NZ_CP068241
Coordinates   1664304..1665176 (-) Length   290 a.a.
NCBI ID   WP_046208645.1    Uniprot ID   -
Organism   Staphylococcus sp. 11-B-312     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1659578..1701897 1664304..1665176 within 0


Gene organization within MGE regions


Location: 1659578..1701897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS07930 (JG554_07930) xerC 1659578..1660468 (-) 891 WP_046208642.1 tyrosine recombinase XerC -
  JG554_RS07935 (JG554_07935) trmFO 1660588..1661895 (-) 1308 WP_107360260.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JG554_RS07940 (JG554_07940) topA 1662045..1664111 (-) 2067 WP_046208644.1 type I DNA topoisomerase -
  JG554_RS07945 (JG554_07945) dprA 1664304..1665176 (-) 873 WP_046208645.1 DNA-processing protein DprA Machinery gene
  JG554_RS07950 (JG554_07950) sucD 1665403..1666308 (-) 906 WP_046208646.1 succinate--CoA ligase subunit alpha -
  JG554_RS07955 (JG554_07955) sucC 1666330..1667496 (-) 1167 WP_046208647.1 ADP-forming succinate--CoA ligase subunit beta -
  JG554_RS07960 (JG554_07960) - 1667604..1668374 (-) 771 WP_064209036.1 ribonuclease HII -
  JG554_RS07965 (JG554_07965) ylqF 1668384..1669244 (-) 861 WP_107360319.1 ribosome biogenesis GTPase YlqF -
  JG554_RS07970 (JG554_07970) - 1669582..1672158 (+) 2577 WP_107360318.1 YfhO family protein -
  JG554_RS07975 (JG554_07975) - 1672187..1674805 (+) 2619 WP_238394751.1 YfhO family protein -
  JG554_RS07980 (JG554_07980) rplS 1674888..1675238 (-) 351 WP_019468465.1 50S ribosomal protein L19 -
  JG554_RS07985 (JG554_07985) trmD 1675342..1676079 (-) 738 WP_046208652.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JG554_RS07990 (JG554_07990) rimM 1676079..1676585 (-) 507 WP_064209040.1 ribosome maturation factor RimM -
  JG554_RS07995 (JG554_07995) rpsP 1676991..1677257 (-) 267 WP_019468468.1 30S ribosomal protein S16 -
  JG554_RS08000 (JG554_08000) - 1677662..1678414 (+) 753 WP_046208654.1 3-oxoacyl-ACP reductase -
  JG554_RS08005 (JG554_08005) - 1678434..1679744 (+) 1311 WP_107360316.1 LLM class flavin-dependent oxidoreductase -
  JG554_RS08010 (JG554_08010) ffh 1679999..1681366 (-) 1368 WP_107360290.1 signal recognition particle protein -
  JG554_RS08015 (JG554_08015) - 1681393..1681725 (-) 333 WP_046208657.1 putative DNA-binding protein -
  JG554_RS08020 (JG554_08020) ftsY 1681712..1682947 (-) 1236 WP_107360289.1 signal recognition particle-docking protein FtsY -
  JG554_RS08025 (JG554_08025) smc 1682944..1686513 (-) 3570 WP_107360288.1 chromosome segregation protein SMC -
  JG554_RS08030 (JG554_08030) rnc 1686769..1687503 (-) 735 WP_046208660.1 ribonuclease III -
  JG554_RS08035 (JG554_08035) - 1687729..1687962 (-) 234 WP_019467939.1 acyl carrier protein -
  JG554_RS08040 (JG554_08040) fabG 1688125..1688862 (-) 738 WP_046208661.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  JG554_RS08045 (JG554_08045) fabD 1688855..1689781 (-) 927 WP_046208662.1 ACP S-malonyltransferase -
  JG554_RS08050 (JG554_08050) plsX 1689774..1690760 (-) 987 WP_046208663.1 phosphate acyltransferase PlsX -
  JG554_RS08055 (JG554_08055) fapR 1690753..1691322 (-) 570 WP_046208664.1 transcription factor FapR -
  JG554_RS08060 (JG554_08060) - 1691614..1693173 (+) 1560 WP_107360287.1 M4 family metallopeptidase -
  JG554_RS08065 (JG554_08065) recG 1693224..1695269 (-) 2046 WP_107360286.1 ATP-dependent DNA helicase RecG -
  JG554_RS08070 (JG554_08070) sdaAA 1695271..1696140 (-) 870 WP_046208667.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  JG554_RS08075 (JG554_08075) sdaAB 1696154..1696819 (-) 666 WP_046208668.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  JG554_RS08080 (JG554_08080) fakA 1697179..1698840 (-) 1662 WP_107360285.1 fatty acid kinase catalytic subunit FakA -
  JG554_RS08085 (JG554_08085) - 1698855..1699226 (-) 372 WP_019467949.1 Asp23/Gls24 family envelope stress response protein -
  JG554_RS08090 (JG554_08090) rpmB 1699466..1699654 (+) 189 WP_002483503.1 50S ribosomal protein L28 -
  JG554_RS08095 (JG554_08095) - 1699736..1700371 (-) 636 WP_064209050.1 thiamine diphosphokinase -
  JG554_RS08100 (JG554_08100) rpe 1700377..1701021 (-) 645 WP_046208671.1 ribulose-phosphate 3-epimerase -
  JG554_RS08105 (JG554_08105) rsgA 1701022..1701897 (-) 876 WP_203265227.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33070.09 Da        Isoelectric Point: 9.7021

>NTDB_id=528495 JG554_RS07945 WP_046208645.1 1664304..1665176(-) (dprA) [Staphylococcus sp. 11-B-312]
MNIDYLFLKLRFSGLSTHQIHRLLKYKNDFMFYNKHEQQAILQLYLSTIKSKKKDQIYQDFVNNPIDAILIQLHKWNINF
IGINHPSYPKLLREIHDPPLILFYKGDITLTTRDQTLAIVGSRHATRYTGDALKFLFPSFKKKDLTIVSGLAEGADQAAH
QHALDNQMSAIAVLGFGHLNHYPKSTQNIRNQLERTGLVISEYLPYQKPLKHHFPERNRLISGLSKGVLITESTIKSGTS
ITTNCALEQNREVYVLPGSMFNDMTMGNLISAQEGAKIVISAKDIIDDFN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=528495 JG554_RS07945 WP_046208645.1 1664304..1665176(-) (dprA) [Staphylococcus sp. 11-B-312]
ATGAACATAGATTATTTATTTTTAAAATTGCGTTTCTCAGGATTGTCCACACATCAAATACATCGATTGCTGAAATATAA
GAATGATTTTATGTTTTACAATAAACACGAGCAGCAAGCAATATTACAACTATATTTATCAACAATTAAATCTAAAAAGA
AAGATCAAATATATCAAGATTTTGTAAACAATCCCATTGATGCCATTCTTATTCAATTACATAAATGGAACATTAATTTT
ATTGGTATTAACCATCCATCATATCCGAAATTGCTTCGCGAAATACATGATCCTCCACTTATACTTTTTTATAAAGGAGA
TATCACGTTAACAACGCGTGATCAAACCCTTGCAATCGTTGGATCTAGACATGCTACTCGATATACAGGGGATGCATTGA
AATTCCTTTTCCCTTCATTTAAAAAGAAAGATCTAACCATAGTCTCTGGATTAGCAGAAGGTGCAGACCAAGCAGCACAT
CAACATGCATTAGACAATCAAATGTCAGCGATTGCGGTGTTAGGATTTGGCCATCTTAATCATTATCCCAAATCAACGCA
AAATATTAGAAATCAACTTGAGCGCACTGGCTTAGTCATAAGTGAATATTTACCATATCAAAAGCCGCTTAAACATCATT
TTCCAGAAAGAAATAGATTAATTAGTGGTTTATCAAAAGGGGTTTTGATTACAGAATCTACAATTAAAAGTGGTACTTCT
ATTACGACTAATTGTGCATTAGAACAAAATAGAGAAGTATATGTTTTGCCAGGTTCGATGTTCAATGATATGACAATGGG
GAACTTAATAAGTGCGCAAGAAGGGGCGAAAATTGTTATATCTGCGAAAGACATCATAGATGATTTTAACTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48

100

0.497
  dprA Staphylococcus aureus MW2

48

100

0.497