Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JG554_RS04175 Genome accession   NZ_CP068241
Coordinates   904688..905107 (+) Length   139 a.a.
NCBI ID   WP_046207767.1    Uniprot ID   -
Organism   Staphylococcus sp. 11-B-312     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 899688..910107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS04150 (JG554_04150) - 901071..901475 (+) 405 WP_019468303.1 F0F1 ATP synthase subunit epsilon -
  JG554_RS04155 (JG554_04155) - 901908..902141 (+) 234 WP_046207763.1 DUF1146 family protein -
  JG554_RS04160 (JG554_04160) murA 902243..903508 (+) 1266 WP_064209846.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JG554_RS04165 (JG554_04165) fabZ 903572..904009 (+) 438 WP_046207765.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JG554_RS04170 (JG554_04170) - 904058..904498 (-) 441 WP_046207766.1 YwpF-like family protein -
  JG554_RS04175 (JG554_04175) ssb 904688..905107 (+) 420 WP_046207767.1 single-stranded DNA-binding protein Machinery gene
  JG554_RS04180 (JG554_04180) - 905556..906257 (+) 702 WP_046207768.1 transglycosylase family protein -
  JG554_RS04185 (JG554_04185) tenA 906739..907428 (+) 690 WP_046207769.1 thiaminase II -
  JG554_RS04190 (JG554_04190) thiD 907421..908242 (+) 822 WP_070039513.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JG554_RS04195 (JG554_04195) thiM 908235..909014 (+) 780 WP_046207793.1 hydroxyethylthiazole kinase -
  JG554_RS04200 (JG554_04200) thiE 909017..909655 (+) 639 WP_070039511.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16086.45 Da        Isoelectric Point: 5.0104

>NTDB_id=528477 JG554_RS04175 WP_046207767.1 904688..905107(+) (ssb) [Staphylococcus sp. 11-B-312]
MINSIVIVGRLTKDPKIYEKEGNKLATFCVAVSRNYKDKNQKVICDYLFCKAFGKIANNVEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIFIETIKFMSPRSKNEDETLFDPLPIDQNPDLISQFDFEENEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=528477 JG554_RS04175 WP_046207767.1 904688..905107(+) (ssb) [Staphylococcus sp. 11-B-312]
ATGATTAACAGTATTGTCATTGTAGGGAGACTAACAAAGGACCCTAAAATTTATGAGAAGGAAGGTAATAAACTAGCTAC
ATTTTGCGTAGCCGTCTCAAGAAATTATAAAGATAAAAATCAAAAAGTTATTTGTGATTATTTATTTTGTAAGGCATTCG
GAAAAATTGCTAATAATGTCGAAAAATATATCAATCAAGGTTCATTGGTTGGTATAACTGGACAAATGCAATCGAGAAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTTTATTGAAACTATTAAATTTATGTCCCCACGTTCTAAAAA
TGAAGATGAAACACTTTTTGATCCACTTCCAATAGATCAAAATCCAGATCTTATAAGTCAATTTGATTTTGAAGAAAACG
AAATTTATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

68

89.928

0.612
  ssb Staphylococcus aureus MW2

67.2

89.928

0.604