Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JHW37_RS24410 Genome accession   NZ_CP068238
Coordinates   5203780..5204337 (+) Length   185 a.a.
NCBI ID   WP_034081446.1    Uniprot ID   E9KTN1
Organism   Pseudomonas aeruginosa strain A39-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5198780..5209337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS24390 (JHW37_24390) pilR 5200056..5201393 (+) 1338 WP_033999343.1 two-component system response regulator PilR Regulator
  JHW37_RS24395 (JHW37_24395) thiO 5201439..5202533 (-) 1095 WP_033999365.1 glycine oxidase ThiO -
  JHW37_RS24400 (JHW37_24400) - 5202668..5203177 (+) 510 WP_003150026.1 GspH/FimT family protein -
  JHW37_RS24405 (JHW37_24405) - 5203283..5203789 (+) 507 WP_012077308.1 Tfp pilus assembly protein FimT/FimU -
  JHW37_RS24410 (JHW37_24410) pilV 5203780..5204337 (+) 558 WP_034081446.1 type IV pilus modification protein PilV Machinery gene
  JHW37_RS24415 (JHW37_24415) pilW 5204334..5205158 (+) 825 WP_034081447.1 type 4a pilus minor pilin PilW -
  JHW37_RS24420 (JHW37_24420) pilX 5205155..5205742 (+) 588 WP_034081449.1 type 4a pilus minor pilin PilX -
  JHW37_RS24425 (JHW37_24425) pilY1 5205754..5209221 (+) 3468 WP_053817771.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19985.21 Da        Isoelectric Point: 8.2269

>NTDB_id=528428 JHW37_RS24410 WP_034081446.1 5203780..5204337(+) (pilV) [Pseudomonas aeruginosa strain A39-1]
MLLKLPRKPLRESGFSLIEVLVALLLVSIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAVKDRLGCWAEQVKKELPGAADLLNSEFYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNPADSGADTSLCHYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=528428 JHW37_RS24410 WP_034081446.1 5203780..5204337(+) (pilV) [Pseudomonas aeruginosa strain A39-1]
ATGCTATTGAAACTCCCGCGCAAACCGCTGCGCGAATCCGGCTTCAGCCTGATCGAAGTGCTGGTCGCCCTGCTGCTGGT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTGGAGCGCAACAAGG
CCGCGATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCAAGCCCCAAGGCCCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCCTCCTCCTGCACGCCATTGCCCGACGCGGT
GAAGGACCGCCTGGGCTGCTGGGCGGAACAGGTGAAGAAGGAATTGCCGGGAGCCGCGGACCTGCTGAACAGCGAGTTCT
ACATCTGCCGCAGTTCGAAGCCGGGCGATTGCGACGGCAAGGGCTCGATGCTGGAGATCCGCCTCGCCTGGCGCGGCAAG
CAGGGCGCCTGCGTCAACCCCGCCGACAGCGGCGCCGACACCTCCCTCTGCCATTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E9KTN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

90.27

100

0.903