Detailed information NTG0528424

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JHW37_RS24275
• Genome accession: NZ_CP068238
• Coordinates: 5178708..5179580 (+)
• Length: 290 a.a.
• NCBI ID: WP_053817760.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain A39-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5173708..5184580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW37_RS24260 (JHW37_24260)	-	5175088..5175558 (-)	471	WP_003152762.1	pilin	-
JHW37_RS24265 (JHW37_24265)	pilB	5175781..5177484 (+)	1704	WP_033998207.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JHW37_RS24270 (JHW37_24270)	pilC	5177488..5178705 (+)	1218	WP_012077296.1	type II secretion system F family protein	Machinery gene
JHW37_RS24275 (JHW37_24275)	pilD	5178708..5179580 (+)	873	WP_053817760.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
JHW37_RS24280 (JHW37_24280)	coaE	5179577..5180188 (+)	612	WP_003152767.1	dephospho-CoA kinase	-
JHW37_RS24285 (JHW37_24285)	yacG	5180185..5180385 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
JHW37_RS24290 (JHW37_24290)	-	5180423..5180632 (-)	210	WP_003152770.1	hypothetical protein	-
JHW37_RS24295 (JHW37_24295)	-	5180738..5181427 (-)	690	WP_012077298.1	energy-coupling factor ABC transporter permease	-
JHW37_RS24300 (JHW37_24300)	-	5181424..5181894 (-)	471	WP_053817761.1	hypothetical protein	-
JHW37_RS24305 (JHW37_24305)	-	5181891..5182316 (-)	426	WP_016562341.1	GNAT family N-acetyltransferase	-
JHW37_RS24310 (JHW37_24310)	-	5182449..5183078 (+)	630	WP_033998217.1	DUF1780 domain-containing protein	-
JHW37_RS24315 (JHW37_24315)	-	5183075..5183515 (+)	441	WP_012077299.1	MOSC domain-containing protein	-
JHW37_RS24320 (JHW37_24320)	-	5183550..5183720 (+)	171	WP_003152781.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31716.69 Da
• Isoelectric Point: 7.3859

>NTDB_id=528424 JHW37_RS24275 WP_053817760.1 5178708..5179580(+) (pilD) [Pseudomonas aeruginosa strain A39-1]
MPLLDYLASHPLAFVLCAIVLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLQPEPDPAIYNLVLPNSSCPHCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFNWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGVVMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=528424 JHW37_RS24275 WP_053817760.1 5178708..5179580(+) (pilD) [Pseudomonas aeruginosa strain A39-1]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCGTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCACCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAGGCGCTCGGGC
TGCAGCCGGAGCCTGATCCGGCGATCTACAACCTGGTCCTGCCGAACTCCTCGTGCCCGCATTGCGGCCACGAGATCCGT
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTAGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCACTTCGGTTTCAATTGGCAGGCCGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGTTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGTGGTCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.16	96.897	0.534
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Acinetobacter nosocomialis M2	49.823	97.586	0.486
pilD	Neisseria gonorrhoeae MS11	50.943	91.379	0.466