Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JHW37_RS09900 Genome accession   NZ_CP068238
Coordinates   2112912..2113547 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain A39-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2107912..2118547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS09885 (JHW37_09885) - 2108608..2109852 (+) 1245 WP_003156869.1 lipoprotein-releasing ABC transporter permease subunit -
  JHW37_RS09890 (JHW37_09890) - 2109953..2110486 (-) 534 WP_034078473.1 DUF2062 domain-containing protein -
  JHW37_RS09895 (JHW37_09895) comA 2110617..2112839 (+) 2223 WP_053816989.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JHW37_RS09900 (JHW37_09900) exbB 2112912..2113547 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JHW37_RS09905 (JHW37_09905) - 2113544..2113984 (+) 441 WP_012075163.1 ExbD/TolR family protein -
  JHW37_RS09910 (JHW37_09910) lpxK 2113984..2114982 (+) 999 WP_053813705.1 tetraacyldisaccharide 4'-kinase -
  JHW37_RS09915 (JHW37_09915) - 2115020..2115205 (+) 186 WP_003157522.1 Trm112 family protein -
  JHW37_RS09920 (JHW37_09920) kdsB 2115205..2115969 (+) 765 WP_012075164.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JHW37_RS09925 (JHW37_09925) - 2115969..2116433 (+) 465 WP_012075165.1 low molecular weight protein-tyrosine-phosphatase -
  JHW37_RS09930 (JHW37_09930) murB 2116430..2117449 (+) 1020 WP_053813706.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=528413 JHW37_RS09900 WP_003091163.1 2112912..2113547(+) (exbB) [Pseudomonas aeruginosa strain A39-1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=528413 JHW37_RS09900 WP_003091163.1 2112912..2113547(+) (exbB) [Pseudomonas aeruginosa strain A39-1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCACTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCGGCGTCATCCACGAACTTGAGCGCTATCT
CAACGCCCTCGGCACCATCGCCGCGATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCGCTGATCACCACGGCCGCC
GGCCTGCTGGTGGCGATCCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81