Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K7X33_RS05610 Genome accession   NZ_CP082355
Coordinates   1171056..1171793 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain VCSW5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1166056..1176793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X33_RS05580 (K7X33_05580) yfiL 1166212..1166577 (-) 366 WP_001308894.1 DUF2799 domain-containing protein -
  K7X33_RS05585 (K7X33_05585) aroF 1166787..1167857 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K7X33_RS05590 (K7X33_05590) tyrA 1167868..1168989 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K7X33_RS05595 (K7X33_05595) pheA 1169032..1170192 (-) 1161 WP_000200127.1 bifunctional chorismate mutase/prephenate dehydratase -
  K7X33_RS05600 (K7X33_05600) pheL 1170292..1170339 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K7X33_RS05605 (K7X33_05605) raiA 1170443..1170784 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K7X33_RS05610 (K7X33_05610) comL 1171056..1171793 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  K7X33_RS05615 (K7X33_05615) rluD 1171928..1172908 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K7X33_RS05620 (K7X33_05620) yfiH 1172905..1173636 (+) 732 WP_000040162.1 purine nucleoside phosphorylase YfiH -
  K7X33_RS05625 (K7X33_05625) clpC 1173766..1176339 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=528346 K7X33_RS05610 WP_000197689.1 1171056..1171793(-) (comL) [Escherichia coli strain VCSW5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=528346 K7X33_RS05610 WP_000197689.1 1171056..1171793(-) (comL) [Escherichia coli strain VCSW5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376