Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K7X33_RS05515 Genome accession   NZ_CP082355
Coordinates   1154482..1156143 (-) Length   553 a.a.
NCBI ID   WP_000880947.1    Uniprot ID   -
Organism   Escherichia coli strain VCSW5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149482..1161143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7X33_RS05495 (K7X33_05495) smpB 1152561..1153043 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  K7X33_RS05500 (K7X33_05500) ratA 1153214..1153651 (+) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  K7X33_RS05505 (K7X33_05505) yfjF 1153641..1153931 (+) 291 WP_001117834.1 RnfH family protein -
  K7X33_RS05510 (K7X33_05510) bamE 1153992..1154333 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  K7X33_RS05515 (K7X33_05515) recN 1154482..1156143 (-) 1662 WP_000880947.1 DNA repair protein RecN Machinery gene
  K7X33_RS05520 (K7X33_05520) nadK 1156229..1157107 (-) 879 WP_001059169.1 NAD(+) kinase -
  K7X33_RS05525 (K7X33_05525) grpE 1157230..1157823 (+) 594 WP_001307957.1 nucleotide exchange factor GrpE -
  K7X33_RS05530 (K7X33_05530) yfjD 1157877..1159163 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  K7X33_RS05535 (K7X33_05535) ypjD 1159184..1159975 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61364.41 Da        Isoelectric Point: 5.4288

>NTDB_id=528345 K7X33_RS05515 WP_000880947.1 1154482..1156143(-) (recN) [Escherichia coli strain VCSW5]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGRECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETAHALHLQRQHYANELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=528345 K7X33_RS05515 WP_000880947.1 1154482..1156143(-) (recN) [Escherichia coli strain VCSW5]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCACAGCGGCATGACCGTAAT
AACCGGTGAAACCGGCGCGGGTAAATCTATTGCGATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGAGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCACTGAAAGATACGCCAGCGGCTCTGCGCTGGCTG
GAAGAAAACCAACTGGAAGATGGCCGTGAATGTCTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCACGAGGTTTTAT
CAACGGTACAGCTGTTCCTCTGTCACAACTTCGCGAACTGGGCCAGTTGCTGATTCAGATCCATGGTCAGCACGCCCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTCCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
AGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACTACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGATCTCG
ATCCCAACCGCCTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCACGCATTACACCTGCAACGCCAGCATTATGCAAATG
AGTTGGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAGTTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCACGCATCGCATTGGCAATTCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTT
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACACACATGCAATCCCTGGATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.156

100

0.382
  recN Bacillus subtilis subsp. subtilis str. 168

34.843

100

0.362