Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6J08_RS04080 Genome accession   NZ_CP068219
Coordinates   839148..840017 (-) Length   289 a.a.
NCBI ID   WP_017638386.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1151     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 834148..845017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J08_RS04065 (I6J08_04060) xerC 834419..835309 (-) 891 WP_017638383.1 tyrosine recombinase XerC -
  I6J08_RS04070 (I6J08_04065) trmFO 835475..836782 (-) 1308 WP_017638384.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I6J08_RS04075 (I6J08_04070) topA 836895..838970 (-) 2076 WP_026083538.1 type I DNA topoisomerase -
  I6J08_RS04080 (I6J08_04075) dprA 839148..840017 (-) 870 WP_017638386.1 DNA-processing protein DprA Machinery gene
  I6J08_RS04085 (I6J08_04080) sucD 840242..841147 (-) 906 WP_017638387.1 succinate--CoA ligase subunit alpha -
  I6J08_RS04090 (I6J08_04085) sucC 841169..842335 (-) 1167 WP_017638388.1 ADP-forming succinate--CoA ligase subunit beta -
  I6J08_RS04095 (I6J08_04090) - 842446..843213 (-) 768 WP_017638389.1 ribonuclease HII -
  I6J08_RS04100 (I6J08_04095) ylqF 843206..844081 (-) 876 WP_017638390.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33585.48 Da        Isoelectric Point: 8.9572

>NTDB_id=528180 I6J08_RS04080 WP_017638386.1 839148..840017(-) (dprA) [Staphylococcus pasteuri strain FDAARGOS_1151]
MNKHFLLKLYWAQFTTSQIHQLNQYYPQLFHVNDYEQESLLHCWITQYQPRLLPKFLDYKQFQYNEIMKVLRQLDINYIT
YFDKDYPYLLKEIYDYPFVLFYKGNKDILKNDKTLAIVGARKCTNYTSQALNYLFPSFKRAQLTIVSGLAAGADSEAHQQ
ALNAYLPTIAVLGYGHTHHYPKSTFSLRKKIEEQGIVISEYPPFSPIAKYKFPARNRLISGLSKGVLLTEANERSGSRIT
IDCALEQNRNVYVLPGKIFDTSTKGNLLLHQEGATIVVNEHDILQDYSI

Nucleotide


Download         Length: 870 bp        

>NTDB_id=528180 I6J08_RS04080 WP_017638386.1 839148..840017(-) (dprA) [Staphylococcus pasteuri strain FDAARGOS_1151]
TTGAACAAACATTTTTTACTTAAATTATACTGGGCTCAGTTTACTACTTCACAAATACATCAACTCAACCAATATTATCC
ACAGCTCTTTCATGTTAATGATTATGAACAAGAATCGTTATTACATTGTTGGATTACTCAATACCAGCCACGATTATTGC
CTAAGTTCCTTGACTACAAACAATTTCAATATAATGAAATTATGAAAGTTCTTCGACAATTAGATATCAACTATATCACC
TATTTTGATAAAGATTATCCCTATTTATTAAAAGAAATATATGATTATCCTTTTGTCTTATTTTATAAGGGTAATAAAGA
CATTTTAAAAAACGATAAAACTTTAGCTATAGTTGGTGCTAGAAAGTGTACAAACTATACAAGCCAAGCACTTAATTATC
TTTTTCCTTCATTTAAAAGGGCTCAACTTACAATTGTATCTGGTCTTGCTGCAGGAGCAGATAGTGAGGCACATCAACAA
GCATTGAATGCCTATTTGCCTACAATTGCTGTATTAGGTTATGGACATACACATCATTATCCAAAATCTACTTTTTCACT
TAGAAAGAAAATTGAAGAACAAGGTATTGTTATTAGCGAATATCCACCATTTTCTCCAATAGCGAAATATAAATTTCCTG
CAAGGAACAGATTGATTAGTGGTTTATCAAAAGGTGTTTTATTAACAGAAGCTAATGAAAGAAGTGGAAGTCGTATTACT
ATAGATTGTGCACTTGAACAAAATCGAAATGTCTATGTATTACCAGGAAAAATATTTGATACCTCAACAAAAGGGAATTT
ATTATTGCATCAAGAAGGCGCAACGATTGTTGTGAATGAACATGATATTTTACAAGACTATTCAATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

58.276

100

0.585
  dprA Staphylococcus aureus N315

58.276

100

0.585