Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J08_RS00425 Genome accession   NZ_CP068219
Coordinates   79588..79971 (+) Length   127 a.a.
NCBI ID   WP_017636762.1    Uniprot ID   A0A654BGK9
Organism   Staphylococcus pasteuri strain FDAARGOS_1151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 74588..84971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J08_RS00395 (I6J08_00395) atpD 74833..76245 (+) 1413 WP_017636767.1 F0F1 ATP synthase subunit beta -
  I6J08_RS00400 (I6J08_00400) - 76265..76666 (+) 402 WP_017636766.1 F0F1 ATP synthase subunit epsilon -
  I6J08_RS00405 (I6J08_00405) - 76817..77050 (+) 234 WP_017636765.1 DUF1146 family protein -
  I6J08_RS00410 (I6J08_00410) murA 77162..78427 (+) 1266 WP_017636764.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6J08_RS00415 (I6J08_00415) fabZ 78463..78903 (+) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6J08_RS00420 (I6J08_00420) - 78962..79402 (-) 441 WP_017636763.1 YwpF-like family protein -
  I6J08_RS00425 (I6J08_00425) ssb 79588..79971 (+) 384 WP_017636762.1 single-stranded DNA-binding protein Machinery gene
  I6J08_RS00430 (I6J08_00430) - 80378..81106 (+) 729 WP_017636761.1 transglycosylase family protein -
  I6J08_RS00435 (I6J08_00435) tenA 81465..82154 (+) 690 WP_017636760.1 thiaminase II -
  I6J08_RS00440 (I6J08_00440) thiD 82147..82968 (+) 822 WP_017636759.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6J08_RS00445 (I6J08_00445) thiM 82961..83752 (+) 792 WP_017636758.1 hydroxyethylthiazole kinase -
  I6J08_RS00450 (I6J08_00450) thiE 83753..84394 (+) 642 WP_017636757.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14600.39 Da        Isoelectric Point: 5.7839

>NTDB_id=528162 I6J08_RS00425 WP_017636762.1 79588..79971(+) (ssb) [Staphylococcus pasteuri strain FDAARGOS_1151]
MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR
KYEKDNQTHFVTELYVETIKFMSSKAKESNILSNEYDEESNELFNIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=528162 I6J08_RS00425 WP_017636762.1 79588..79971(+) (ssb) [Staphylococcus pasteuri strain FDAARGOS_1151]
ATGTTAAACAAAATAGTTATAGTTGGCAGACTTACTAAAGATGCCCAAATTTATGAAAAGGAGGACGGTAATAAAGTAGC
AACTTTTTGTGTAGCTACTGAAAGAAATTATAAAGATCAAAATAATGAGATTGCATGCGATTATCTATATTGTAAAGCTT
TTGGCAAAACTGCAAGTAACATTGAAAAATATACACATCAAGGTTCACTAGTAGGAATAACTGGTCAAATGCGATCGCGA
AAATATGAAAAAGATAACCAGACTCATTTTGTAACAGAACTATATGTAGAAACAATTAAATTTATGTCCTCTAAGGCAAA
AGAATCCAATATCCTCTCTAACGAATATGATGAAGAGTCAAATGAACTCTTTAATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654BGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

81.579

89.764

0.732
  ssb Staphylococcus aureus MW2

80.702

89.764

0.724