Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   I6J09_RS11155 Genome accession   NZ_CP068216
Coordinates   2300845..2301414 (+) Length   189 a.a.
NCBI ID   WP_154894841.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2295845..2306414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS11130 (I6J09_11125) - 2296682..2298190 (+) 1509 WP_208969848.1 bifunctional metallophosphatase/5'-nucleotidase -
  I6J09_RS11135 (I6J09_11130) - 2298347..2298949 (-) 603 WP_208969849.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  I6J09_RS11140 (I6J09_11135) - 2298955..2299140 (-) 186 WP_002450747.1 YkvS family protein -
  I6J09_RS11145 (I6J09_11140) - 2299344..2300330 (+) 987 WP_154894843.1 lipoate--protein ligase -
  I6J09_RS11150 (I6J09_11145) - 2300409..2300627 (-) 219 WP_119622756.1 IDEAL domain-containing protein -
  I6J09_RS11155 (I6J09_11150) comK/comK1 2300845..2301414 (+) 570 WP_154894841.1 competence protein ComK Regulator
  I6J09_RS12610 - 2302436..2302570 (-) 135 WP_259342676.1 hypothetical protein -
  I6J09_RS11170 (I6J09_11165) - 2302640..2302996 (-) 357 WP_017638419.1 DoxX family protein -
  I6J09_RS11175 (I6J09_11170) - 2303299..2303751 (+) 453 WP_070452237.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6J09_RS11180 (I6J09_11175) - 2303767..2304276 (+) 510 WP_119477648.1 GNAT family N-acetyltransferase -
  I6J09_RS11185 (I6J09_11180) - 2304293..2304898 (+) 606 WP_119623103.1 FMN-binding negative transcriptional regulator -
  I6J09_RS12615 - 2304952..2305053 (-) 102 WP_017638068.1 SAR1012 family small protein -
  I6J09_RS11190 (I6J09_11185) - 2305157..2305369 (-) 213 WP_208969850.1 TM2 domain-containing protein -
  I6J09_RS11195 (I6J09_11190) - 2305586..2306137 (+) 552 WP_017638070.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22451.73 Da        Isoelectric Point: 9.4950

>NTDB_id=528159 I6J09_RS11155 WP_154894841.1 2300845..2301414(+) (comK/comK1) [Staphylococcus pasteuri strain FDAARGOS_1152]
MTTQSIYVIRKGDMVIRPNYDENNQQNGSEILRYDKSIIQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPIFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKIIFANNETIILNISFHSLWHQYTNAIIFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=528159 I6J09_RS11155 WP_154894841.1 2300845..2301414(+) (comK/comK1) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGACAACTCAGAGTATTTACGTTATTAGAAAGGGAGATATGGTTATCAGACCTAACTATGATGAAAATAATCAGCAAAA
TGGTTCTGAAATATTAAGGTATGATAAGTCAATTATTCAGAGTCCATTTAAGGTTCAAAAGATTATTGAAAGATCATGCA
AATTTTACGGTAATAATTATTTAAGTAAAAAAGCAGAAACTAATCGTATTACAGGTATTTCTAGTAAACCCCCGATTTTA
TTAACACCCATTTTTCCTACTTATTTTTTCCCAACACATTCTGACAGGCAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGAATCAATTAAAGAATTAAAACATCGTAAATGTAAAATCATATTTGCTAATAATGAAACGATTATTTTGAACATAT
CATTTCACAGTTTATGGCATCAATACACCAATGCAATTATCTTTTATTACATGGTTGATAAACAATCCCGCATGAAATCA
AATGACCCCGATAAACCTATTGATTATGAAAAATCCTCTTTAAATATTTTTGAAGCACTTTCACGTTATTCCCTATTTGT
AGACAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(6-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

77.249

100

0.772
  comK/comK1 Staphylococcus aureus N315

77.249

100

0.772