Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J09_RS03960 Genome accession   NZ_CP068216
Coordinates   823400..823783 (-) Length   127 a.a.
NCBI ID   WP_017636762.1    Uniprot ID   A0A654BGK9
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 818400..828783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS03935 (I6J09_03930) thiE 818977..819618 (-) 642 WP_046466906.1 thiamine phosphate synthase -
  I6J09_RS03940 (I6J09_03935) thiM 819619..820410 (-) 792 WP_208970007.1 hydroxyethylthiazole kinase -
  I6J09_RS03945 (I6J09_03940) thiD 820403..821224 (-) 822 WP_029056186.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6J09_RS03950 (I6J09_03945) tenA 821217..821906 (-) 690 WP_017636760.1 thiaminase II -
  I6J09_RS03955 (I6J09_03950) - 822265..822993 (-) 729 WP_029056185.1 transglycosylase family protein -
  I6J09_RS03960 (I6J09_03955) ssb 823400..823783 (-) 384 WP_017636762.1 single-stranded DNA-binding protein Machinery gene
  I6J09_RS03965 (I6J09_03960) - 823969..824409 (+) 441 WP_017636763.1 YwpF-like family protein -
  I6J09_RS03970 (I6J09_03965) fabZ 824468..824908 (-) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6J09_RS03975 (I6J09_03970) murA 824944..826209 (-) 1266 WP_017636764.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6J09_RS03980 (I6J09_03975) - 826321..826554 (-) 234 WP_017636765.1 DUF1146 family protein -
  I6J09_RS03985 (I6J09_03980) - 826705..827106 (-) 402 WP_017636766.1 F0F1 ATP synthase subunit epsilon -
  I6J09_RS03990 (I6J09_03985) atpD 827126..828538 (-) 1413 WP_017636767.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14600.39 Da        Isoelectric Point: 5.7839

>NTDB_id=528143 I6J09_RS03960 WP_017636762.1 823400..823783(-) (ssb) [Staphylococcus pasteuri strain FDAARGOS_1152]
MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR
KYEKDNQTHFVTELYVETIKFMSSKAKESNILSNEYDEESNELFNIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=528143 I6J09_RS03960 WP_017636762.1 823400..823783(-) (ssb) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGTTAAACAAAATAGTTATAGTTGGCAGACTTACTAAAGATGCCCAAATTTATGAAAAGGAGGACGGTAATAAAGTAGC
AACTTTTTGTGTAGCTACTGAAAGAAATTATAAAGATCAAAATAATGAGATTGCATGCGATTATCTATATTGTAAAGCAT
TTGGCAAAACTGCAAGTAACATTGAAAAATATACACATCAAGGTTCACTAGTAGGAATAACTGGTCAAATGCGATCGCGA
AAATATGAAAAAGATAACCAGACTCATTTTGTAACAGAACTATATGTAGAAACAATTAAATTTATGTCCTCTAAGGCAAA
AGAATCCAATATCCTCTCTAACGAATATGATGAAGAGTCAAATGAACTCTTTAATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654BGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

81.579

89.764

0.732
  ssb Staphylococcus aureus MW2

80.702

89.764

0.724