Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6J09_RS00295 Genome accession   NZ_CP068216
Coordinates   64368..65237 (+) Length   289 a.a.
NCBI ID   WP_017638386.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 59368..70237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS00275 (I6J09_00275) ylqF 60303..61178 (+) 876 WP_119622627.1 ribosome biogenesis GTPase YlqF -
  I6J09_RS00280 (I6J09_00280) - 61171..61938 (+) 768 WP_208969885.1 ribonuclease HII -
  I6J09_RS00285 (I6J09_00285) sucC 62050..63216 (+) 1167 WP_017638388.1 ADP-forming succinate--CoA ligase subunit beta -
  I6J09_RS00290 (I6J09_00290) sucD 63238..64143 (+) 906 WP_017638387.1 succinate--CoA ligase subunit alpha -
  I6J09_RS00295 (I6J09_00295) dprA 64368..65237 (+) 870 WP_017638386.1 DNA-processing protein DprA Machinery gene
  I6J09_RS00300 (I6J09_00300) topA 65415..67490 (+) 2076 WP_026083538.1 type I DNA topoisomerase -
  I6J09_RS00305 (I6J09_00305) trmFO 67603..68910 (+) 1308 WP_029055445.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I6J09_RS00310 (I6J09_00310) xerC 69076..69966 (+) 891 WP_017638383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33585.48 Da        Isoelectric Point: 8.9572

>NTDB_id=528125 I6J09_RS00295 WP_017638386.1 64368..65237(+) (dprA) [Staphylococcus pasteuri strain FDAARGOS_1152]
MNKHFLLKLYWAQFTTSQIHQLNQYYPQLFHVNDYEQESLLHCWITQYQPRLLPKFLDYKQFQYNEIMKVLRQLDINYIT
YFDKDYPYLLKEIYDYPFVLFYKGNKDILKNDKTLAIVGARKCTNYTSQALNYLFPSFKRAQLTIVSGLAAGADSEAHQQ
ALNAYLPTIAVLGYGHTHHYPKSTFSLRKKIEEQGIVISEYPPFSPIAKYKFPARNRLISGLSKGVLLTEANERSGSRIT
IDCALEQNRNVYVLPGKIFDTSTKGNLLLHQEGATIVVNEHDILQDYSI

Nucleotide


Download         Length: 870 bp        

>NTDB_id=528125 I6J09_RS00295 WP_017638386.1 64368..65237(+) (dprA) [Staphylococcus pasteuri strain FDAARGOS_1152]
TTGAACAAACATTTTTTACTTAAATTATACTGGGCTCAGTTTACTACTTCACAAATACATCAACTCAACCAATATTATCC
ACAGCTCTTTCATGTTAATGATTATGAACAAGAATCGTTATTACATTGTTGGATTACTCAATACCAGCCACGATTATTGC
CTAAGTTCCTTGACTACAAACAATTTCAATATAATGAAATTATGAAAGTTCTTCGACAATTAGATATCAACTATATCACC
TATTTTGATAAAGATTATCCCTATTTATTAAAAGAAATATATGATTATCCTTTTGTCTTATTTTATAAGGGTAATAAAGA
CATTTTAAAAAACGATAAAACTTTAGCTATAGTTGGTGCTAGAAAGTGTACAAACTATACAAGCCAAGCACTTAATTATC
TTTTTCCTTCATTTAAAAGGGCTCAACTTACAATTGTATCTGGTCTTGCTGCAGGAGCAGATAGTGAGGCACATCAACAA
GCATTGAATGCCTATTTGCCTACAATTGCTGTATTAGGTTATGGACATACACATCATTATCCAAAATCTACTTTTTCACT
TAGAAAGAAAATTGAAGAACAAGGTATTGTTATTAGCGAATATCCACCATTTTCTCCAATAGCGAAATATAAATTTCCTG
CAAGGAACAGATTGATTAGTGGTTTATCAAAAGGTGTTTTACTAACTGAAGCAAATGAAAGAAGTGGAAGTCGTATTACT
ATAGATTGTGCACTTGAACAAAATCGAAATGTCTATGTATTACCTGGAAAAATATTTGATACCTCAACAAAAGGGAATTT
ATTATTGCATCAAGAAGGCGCAACGATTGTTGTGAATGAACATGATATCTTACAAGACTATTCAATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

58.276

100

0.585
  dprA Staphylococcus aureus N315

58.276

100

0.585