Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BAJP3144_RS20155 Genome accession   NZ_CP082283
Coordinates   4083127..4083921 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4078127..4088921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS20135 (BAJP3144_20135) - 4078233..4079651 (-) 1419 WP_191389387.1 cell wall metabolism sensor histidine kinase WalK -
  BAJP3144_RS20140 (BAJP3144_20140) - 4079648..4080331 (-) 684 WP_014419337.1 response regulator transcription factor -
  BAJP3144_RS20145 (BAJP3144_20145) - 4080545..4081456 (+) 912 WP_110124461.1 PepSY domain-containing protein -
  BAJP3144_RS20150 (BAJP3144_20150) htrA 4081844..4083040 (-) 1197 WP_022554034.1 S1C family serine protease Regulator
  BAJP3144_RS20155 (BAJP3144_20155) vicX 4083127..4083921 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  BAJP3144_RS20160 (BAJP3144_20160) - 4083936..4084775 (-) 840 WP_014419340.1 two-component system regulatory protein YycI -
  BAJP3144_RS20165 (BAJP3144_20165) yycH 4084762..4086120 (-) 1359 WP_191389389.1 two-component system activity regulator YycH -
  BAJP3144_RS20170 (BAJP3144_20170) walK 4086110..4087945 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  BAJP3144_RS20175 (BAJP3144_20175) walR 4087952..4088659 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=528106 BAJP3144_RS20155 WP_004393110.1 4083127..4083921(-) (vicX) [Bacillus amyloliquefaciens strain JP3144]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=528106 BAJP3144_RS20155 WP_004393110.1 4083127..4083921(-) (vicX) [Bacillus amyloliquefaciens strain JP3144]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCCGTCTACGCG
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAGGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527