Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BAJP3144_RS18785 Genome accession   NZ_CP082283
Coordinates   3801575..3801694 (+) Length   39 a.a.
NCBI ID   WP_021494790.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3796575..3806694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS18765 (BAJP3144_18765) narK 3796734..3797924 (-) 1191 WP_154817753.1 nitrate transporter NarK -
  BAJP3144_RS18770 (BAJP3144_18770) argS 3798059..3799729 (-) 1671 WP_191389297.1 arginine--tRNA ligase -
  BAJP3144_RS18775 (BAJP3144_18775) - 3799726..3800154 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  BAJP3144_RS18780 (BAJP3144_18780) rapF 3800446..3801591 (+) 1146 WP_022553933.1 tetratricopeptide repeat protein Regulator
  BAJP3144_RS18785 (BAJP3144_18785) phrF 3801575..3801694 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAJP3144_RS18790 (BAJP3144_18790) - 3801893..3802096 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  BAJP3144_RS18795 (BAJP3144_18795) - 3802110..3802313 (+) 204 WP_007407641.1 hypothetical protein -
  BAJP3144_RS18800 (BAJP3144_18800) - 3802348..3802533 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  BAJP3144_RS18805 (BAJP3144_18805) - 3802720..3803001 (+) 282 WP_007407643.1 hypothetical protein -
  BAJP3144_RS18810 (BAJP3144_18810) - 3803045..3803557 (+) 513 WP_031304384.1 stage II sporulation protein M -
  BAJP3144_RS18815 (BAJP3144_18815) - 3804148..3804366 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  BAJP3144_RS18820 (BAJP3144_18820) speB 3804519..3805391 (-) 873 WP_053285340.1 agmatinase -
  BAJP3144_RS18825 (BAJP3144_18825) speE 3805450..3806280 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=528100 BAJP3144_RS18785 WP_021494790.1 3801575..3801694(+) (phrF) [Bacillus amyloliquefaciens strain JP3144]
MKLKYKLALTCLAIGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=528100 BAJP3144_RS18785 WP_021494790.1 3801575..3801694(+) (phrF) [Bacillus amyloliquefaciens strain JP3144]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGATAGGCACTATTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462