Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   BAJP3144_RS08615 Genome accession   NZ_CP082283
Coordinates   1723651..1725525 (+) Length   624 a.a.
NCBI ID   WP_061862206.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1718651..1730525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS08600 (BAJP3144_08600) ymcA 1719702..1720133 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAJP3144_RS08605 (BAJP3144_08605) cotE 1720386..1720931 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAJP3144_RS08610 (BAJP3144_08610) hexA 1721050..1723635 (+) 2586 WP_222893625.1 DNA mismatch repair protein MutS Machinery gene
  BAJP3144_RS08615 (BAJP3144_08615) hexB 1723651..1725525 (+) 1875 WP_061862206.1 DNA mismatch repair endonuclease MutL Machinery gene
  BAJP3144_RS20705 - 1725578..1725703 (+) 126 Protein_1664 ArpU family transcriptional regulator -
  BAJP3144_RS08620 (BAJP3144_08620) - 1725705..1726246 (+) 542 Protein_1665 tyrosine-type recombinase/integrase -
  BAJP3144_RS08625 (BAJP3144_08625) - 1726734..1726922 (+) 189 WP_053284987.1 hypothetical protein -
  BAJP3144_RS08630 (BAJP3144_08630) - 1727085..1727636 (+) 552 WP_123117829.1 hypothetical protein -
  BAJP3144_RS08635 (BAJP3144_08635) - 1727754..1728569 (-) 816 WP_160182671.1 hypothetical protein -
  BAJP3144_RS08640 (BAJP3144_08640) - 1728862..1729071 (-) 210 WP_160182672.1 hypothetical protein -
  BAJP3144_RS08645 (BAJP3144_08645) - 1729715..1730392 (+) 678 WP_160182673.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70138.43 Da        Isoelectric Point: 6.0176

>NTDB_id=528030 BAJP3144_RS08615 WP_061862206.1 1723651..1725525(+) (hexB) [Bacillus amyloliquefaciens strain JP3144]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADH
GVPPELGMPVTEAPVSDIPEPEAVSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=528030 BAJP3144_RS08615 WP_061862206.1 1723651..1725525(+) (hexB) [Bacillus amyloliquefaciens strain JP3144]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATTAAAACGAGCATCGGCGAGGGAGCGGGCACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGTCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGATGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTACATCCCTCAAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCGC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTAATAATAGAAGAAGAGATCCTCCCGAATGAAGCGGATCAC
GGAGTGCCGCCGGAGCTCGGCATGCCGGTAACGGAAGCGCCTGTTTCCGATATTCCGGAGCCGGAAGCTGTCTCTGAAGA
AATACGTGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAAAAAGTCGGGCAGGTCGAG
CCTGAAGTACAGGACATGATCGTGCCGCTCACCTTTCATTACGCGGCAAATGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGTGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCCAACCGCCATTTGCGAAACGACGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAG

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.357

100

0.479