Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAJP3144_RS08600 Genome accession   NZ_CP082283
Coordinates   1719702..1720133 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714702..1725133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS08580 (BAJP3144_08580) spoVS 1715272..1715532 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BAJP3144_RS08585 (BAJP3144_08585) tdh 1715790..1716836 (+) 1047 WP_106067965.1 L-threonine 3-dehydrogenase -
  BAJP3144_RS08590 (BAJP3144_08590) - 1716849..1718027 (+) 1179 WP_106067964.1 glycine C-acetyltransferase -
  BAJP3144_RS08595 (BAJP3144_08595) miaB 1718170..1719699 (+) 1530 WP_021493666.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAJP3144_RS08600 (BAJP3144_08600) ymcA 1719702..1720133 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAJP3144_RS08605 (BAJP3144_08605) cotE 1720386..1720931 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAJP3144_RS08610 (BAJP3144_08610) hexA 1721050..1723635 (+) 2586 WP_222893625.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=528028 BAJP3144_RS08600 WP_003154113.1 1719702..1720133(+) (ymcA) [Bacillus amyloliquefaciens strain JP3144]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=528028 BAJP3144_RS08600 WP_003154113.1 1719702..1720133(+) (ymcA) [Bacillus amyloliquefaciens strain JP3144]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCTGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916