Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6J13_RS02565 Genome accession   NZ_CP068213
Coordinates   527948..529180 (-) Length   410 a.a.
NCBI ID   WP_003068865.1    Uniprot ID   A0AAD2SY77
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 522948..534180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS02545 (I6J13_02545) - 523384..525129 (-) 1746 WP_006269393.1 ABC transporter ATP-binding protein -
  I6J13_RS02550 (I6J13_02550) - 525343..526140 (-) 798 WP_006269368.1 formate/nitrite transporter family protein -
  I6J13_RS02555 (I6J13_02555) - 526316..527023 (-) 708 WP_003068871.1 glucosaminidase domain-containing protein -
  I6J13_RS02560 (I6J13_02560) yihA 527348..527935 (-) 588 WP_006269383.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6J13_RS02565 (I6J13_02565) clpX 527948..529180 (-) 1233 WP_003068865.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6J13_RS02570 (I6J13_02570) - 529234..529407 (-) 174 WP_003024903.1 hypothetical protein -
  I6J13_RS02575 (I6J13_02575) - 529407..529919 (-) 513 WP_003068862.1 dihydrofolate reductase -
  I6J13_RS02580 (I6J13_02580) - 530205..531044 (-) 840 WP_003068859.1 thymidylate synthase -
  I6J13_RS02585 (I6J13_02585) - 531130..532347 (-) 1218 WP_006269384.1 chloride channel protein -
  I6J13_RS02590 (I6J13_02590) - 532363..532626 (-) 264 WP_006267865.1 chorismate mutase -
  I6J13_RS02595 (I6J13_02595) - 532665..533507 (-) 843 WP_006269382.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45677.14 Da        Isoelectric Point: 4.3940

>NTDB_id=528027 I6J13_RS02565 WP_003068865.1 527948..529180(-) (clpX) [Streptococcus constellatus strain FDAARGOS_1156]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=528027 I6J13_RS02565 WP_003068865.1 527948..529180(-) (clpX) [Streptococcus constellatus strain FDAARGOS_1156]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAACAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGTCCAACCGGTTCAGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCGACAGCTTTGACGGAAGCTGGCTATGTCGGGGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAACGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTGGATACC
AAGAATATTCTTTTTATCGTTGGCGGTGCTTTTGACGGAATCGAAGAAATCGTCAAACAACGTCTAGGTGAAAAGATCAT
TGGTTTTGGTCAAAATAACAAAGCTATTGATGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGGCTTATTCCTGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACTGTTGATGATTTGGTGCGA
ATTCTCCGTGAGCCTAAGAATGCTTTAGTGAAACAATATCAAACGCTTCTTTCTTATGACGATGTTACATTAGAGTTTGA
TGATGATGCTCTCCAAGAGATTGCTAACAAAGCTATTGAACGCAAGACAGGCGCTCGTGGCTTGCGCTCGATTATCGAAG
AAACCATGATGGATGTCATGTTTGAAGTACCAAGTCAAGAAAATGTGAAGTTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCGATTTTAGAAACAGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.049

0.573