Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   U063_RS03980 Genome accession   NC_022886
Coordinates   787831..788382 (+) Length   183 a.a.
NCBI ID   WP_023592061.1    Uniprot ID   -
Organism   Helicobacter pylori BM012A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 782831..793382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U063_RS03965 (U063_0792) cysS 783010..784407 (-) 1398 WP_023592058.1 cysteine--tRNA ligase -
  U063_RS03970 (U063_0793) murJ 784408..785868 (-) 1461 WP_023592059.1 murein biosynthesis integral membrane protein MurJ -
  U063_RS03975 (U063_0794) - 785961..787805 (+) 1845 WP_023592060.1 FapA family protein -
  U063_RS03980 (U063_0795) ruvA 787831..788382 (+) 552 WP_023592061.1 Holliday junction branch migration protein RuvA Machinery gene
  U063_RS03990 (U063_0796) - 788707..791172 (+) 2466 WP_038420438.1 DUF3519 domain-containing protein -
  U063_RS03995 (U063_0797) - 791326..792183 (+) 858 WP_023592063.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20203.81 Da        Isoelectric Point: 9.4125

>NTDB_id=52798 U063_RS03980 WP_023592061.1 787831..788382(+) (ruvA) [Helicobacter pylori BM012A]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLEAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENKPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=52798 U063_RS03980 WP_023592061.1 787831..788382(+) (ruvA) [Helicobacter pylori BM012A]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTGAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATCAAAG
AAGACGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCTACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATCTCATTGGCTTTTTCATTCAAG
ATGAAAATAAGCCCGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGTGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAGCCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGTTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

95.628

100

0.956
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361